RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB4632" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB4632 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
990076 990076 PRJEB4632_P_NODE_901_length_244_cov_1.976608_g863_i0 PRJEB4632 901 244 1.976608 4.82292352 Nowakowskiella 109880 Fungi Fungi 302 1.98e-77   NTclustered gi|1866582484|gb|MT730659.1| 109881 g863 i0 90.254 97.9098360655738 236 16 97 2 9 244 4296 4068 Nowakowskiella elegans isolate JEL0046 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23890 305 0.99016393442623 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella elegans
4817913 4817913 PRJEB4632_S_NODE_204_length_157_cov_31.663934_g202_i0 PRJEB4632 204 157 31.663934 49.71237638 Halomyces 1675843 Fungi Fungi 235 1.2e-57   NTclustered gi|1270189507|gb|MG266094.1| 175247 g202 i0 93.631 100.687898089172 157 10 100 0 1 157 497 653 Uncultured Chytridiomycota clone MossITSLSU815 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15808 235 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
5163906 5163906 PRJEB4632_P_NODE_1065_length_214_cov_4.595745_g1027_i0 PRJEB4632 1065 214 4.595745 9.8348943 Betamyces sp. 2040705 Fungi Fungi 261 2.88e-65   NTclustered gi|1866582807|gb|MT730982.1| 2040705 g1027 i0 88.837 102.056074766355 215 21 100 3 1 214 4802 4590 Betamyces sp. isolate UM1567 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21840 261 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Alphamycetaceae Betamyces Betamyces sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;