RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB4632" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB4632 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9918224 9918224 PRJEB4632_P_NODE_708_length_260_cov_1.262032_g670_i0 PRJEB4632 708 260 1.262032 3.2812832 Peredibacter 263370 Bacteria Bacteria 394 3.419999999999999e-105   NTclustered gi|2631252187|gb|CP139487.1| 28202 g670 i0 94.208 13.9192307692308 259 14 99 1 2 260 512329 512072 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 3619 394 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
11539803 11539803 PRJEB4632_P_NODE_750_length_251_cov_1.730337_g712_i0 PRJEB4632 750 251 1.730337 4.34314587 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 381 2.549999999999999e-101   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g712 i0 94.715 111.621513944223 246 12 98 1 6 250 3447317 3447072 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 28017 381 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
28801786 28801786 PRJEB4632_P_NODE_868_length_246_cov_0.890173_g830_i0 PRJEB4632 868 246 0.890173 2.18982558 Bdellovibrionales bacterium RIFOXYD1_FULL_53_11 1797403 Bacteria Bacteria 155 1.62e-43   NR OFZ79974.1 1797403 g830 i0 87.8 2 82 10 100 0 1 246 244 325 OFZ79974.1 MAG: adenylosuccinate lyase [Bdellovibrionales bacterium RIFOXYD1_FULL_53_11] diamond 492 155 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYD1_FULL_53_11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;