contig_metadata
8 rows where bioproject = "PRJEB4632", tax_kingdom = "Metazoa" and tax_phylum = "Chordata"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2265290 | 2265290 | PRJEB4632_P_NODE_922_length_244_cov_0.900585_g884_i0 | PRJEB4632 | 922 | 244 | 0.900585 | 2.1974274 | Mus | 10088 | Chordata | Chordata | 451 | 1.86e-122 | NTclustered | gi|756142290|gb|KP260515.1| | 10090 | g884 | i0 | 100 | 100 | 244 | 0 | 100 | 0 | 1 | 244 | 4281 | 4038 | Mus musculus strain ME mitochondrion, complete genome | blastn | 24400 | 451 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Mus | Mus musculus | |
| 5163912 | 5163912 | PRJEB4632_P_NODE_585_length_290_cov_1.419355_g547_i0 | PRJEB4632 | 585 | 290 | 1.419355 | 4.1161295 | Mus musculus | 10090 | Chordata | Chordata | 536 | 6.079999999999999e-148 | NTclustered | gi|28881816|emb|AL662809.14| | 10090 | g547 | i0 | 100 | 25.444827586206905 | 290 | 0 | 100 | 0 | 1 | 290 | 17424 | 17713 | Mouse DNA sequence from clone RP23-441I8 on chromosome 11, complete sequence | blastn | 7379 | 536 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Mus | Mus musculus | |
| 5163920 | 5163920 | PRJEB4632_P_NODE_785_length_250_cov_0.870056_g747_i0 | PRJEB4632 | 785 | 250 | 0.870056 | 2.17514 | Mus musculus | 10090 | Chordata | Chordata | 462 | 8.83e-126 | NTclustered | gi|557675248|emb|CT033777.7| | 10090 | g747 | i0 | 100 | 9.952 | 250 | 0 | 100 | 0 | 1 | 250 | 155091 | 155340 | Mouse DNA sequence from clone RP24-267J1 on chromosome 13, complete sequence | blastn | 2488 | 462 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Mus | Mus musculus | |
| 5163922 | 5163922 | PRJEB4632_P_NODE_845_length_247_cov_4.373563_g807_i0 | PRJEB4632 | 845 | 247 | 4.373563 | 10.80270061 | Mus musculus | 10090 | Chordata | Chordata | 453 | 5.2400000000000005e-123 | NTclustered | gi|199806|gb|J03151.1|MUSMRP | 10090 | g807 | i0 | 100 | 10.5222672064777 | 245 | 0 | 99 | 0 | 3 | 247 | 1098 | 854 | Mouse mitochondrial RNA-processing endoribonuclease RNA gene | blastn | 2599 | 453 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Mus | Mus musculus | |
| 10264406 | 10264406 | PRJEB4632_S_NODE_169_length_168_cov_6.609023_g167_i0 | PRJEB4632 | 169 | 168 | 6.609023 | 11.10315864 | Mus musculus | 10090 | Chordata | Chordata | 281 | 1.65e-71 | NTclustered | gi|12846881|dbj|AK011030.1| | 10090 | g167 | i0 | 99.359 | 92.6607142857143 | 156 | 0 | 92 | 1 | 14 | 168 | 563 | 408 | Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2510030E10 product:hemoglobin, beta adult major chain, full insert sequence | blastn | 15567 | 281 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Mus | Mus musculus | |
| 11539809 | 11539809 | PRJEB4632_S_NODE_110_length_196_cov_4.161491_g108_i0 | PRJEB4632 | 110 | 196 | 4.161491 | 8.15652236 | Mus musculus | 10090 | Chordata | Chordata | 316 | 5.45e-82 | NTclustered | gi|209552504|gb|FJ209304.1| | 10090 | g108 | i0 | 96.842 | 9.62755102040816 | 190 | 5 | 97 | 1 | 7 | 196 | 914 | 726 | Mus musculus MALAT1 mRNA, complete sequence | blastn | 1887 | 316 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Mus | Mus musculus | |
| 12815028 | 12815028 | PRJEB4632_P_NODE_771_length_251_cov_0.865169_g733_i0 | PRJEB4632 | 771 | 251 | 0.865169 | 2.17157419 | Mus musculus | 10090 | Chordata | Chordata | 459 | 1.1499999999999996e-124 | NTclustered | gi|33147466|gb|AC112274.4| | 10090 | g733 | i0 | 99.602 | 2 | 251 | 1 | 100 | 0 | 1 | 251 | 12475 | 12725 | Mus musculus BAC clone RP24-125F23 from chromosome 10, complete sequence | blastn | 502 | 459 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Mus | Mus musculus | |
| 17913101 | 17913101 | PRJEB4632_S_NODE_195_length_162_cov_1.125984_g193_i0 | PRJEB4632 | 195 | 162 | 1.125984 | 1.82409408 | Mus musculus | 10090 | Chordata | Chordata | 283 | 4.39e-72 | NTclustered | gi|342187297|ref|NG_007139.2| | 10090 | g193 | i0 | 98.75 | 70.8271604938272 | 160 | 1 | 99 | 1 | 3 | 162 | 506 | 348 | Mus musculus predicted gene 10076 (Gm10076) pseudogene on chromosome 14 | blastn | 11474 | 283 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Mus | Mus musculus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;