RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB4632", tax_kingdom = "Metazoa" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB4632 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
990073 990073 PRJEB4632_P_NODE_741_length_253_cov_1.405556_g703_i0 PRJEB4632 741 253 1.405556 3.55605668 Aphididae 27482 Arthropoda Arthropoda 407 4.2500000000000005e-109   NTclustered gi|1685532496|ref|XR_003840248.1| 7029 g703 i0 95.652 39.0276679841897 253 11 100 0 1 253 505 757 PREDICTED: Acyrthosiphon pisum uncharacterized LOC107885124 (LOC107885124), ncRNA blastn 9874 407 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Aphididae Acyrthosiphon Acyrthosiphon pisum
18841720 18841720 PRJEB4632_P_NODE_335_length_394_cov_44.887850_g297_i0 PRJEB4632 335 394 44.88785 176.858129 root 1 Root_unresolved Root_unresolved 723 0   NTclustered gi|78097480|gb|AC167666.4| 7176 g297 i0 99.746 247.020304568528 394 1 100 0 1 394 869 1262 Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940120D9, complete sequence blastn 97326 728 0.993131868131868 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Culicidae Culex Culex quinquefasciatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;