RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB4632", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB4632 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9918223 9918223 PRJEB4632_P_NODE_608_length_283_cov_1.733333_g570_i0 PRJEB4632 608 283 1.733333 4.90533239 Schlesneria 656899 Bacteria Bacteria 403 6.26e-108   NTclustered gi|12583970|gb|AF245374.1|AF245374 149589 g570 i0 92.308 148.946996466431 286 18 100 4 1 283 1780 1496 Planctomycete str. 639 23S ribosomal RNA gene, partial sequence blastn 42152 403 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   planctomycete str. 639
14089960 14089960 PRJEB4632_P_NODE_592_length_289_cov_1.226852_g554_i0 PRJEB4632 592 289 1.226852 3.54560228 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 292 1.45e-74   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g554 i0 85.274 365.98615916955 292 34 99 9 1 288 2002077 2001791 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 105770 292 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
25216181 25216181 PRJEB4632_P_NODE_440_length_330_cov_1.280156_g402_i0 PRJEB4632 440 330 1.280156 4.2245148 Planctomycetaceae 126 Bacteria Bacteria 313 1.29e-80   NTclustered gi|2874253757|emb|OY969698.1| 100233 g402 i0 91.928 81.7878787878788 223 18 68 0 31 253 4421661 4421439 MAG: uncultured Planctomycetaceae bacterium isolate MFD00082.bin.2.56 genome assembly, chromosome: 1 blastn 26990 315 0.993650793650794 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;