RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB4632" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB4632 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5163923 5163923 PRJEB4632_P_NODE_865_length_246_cov_1.757225_g827_i0 PRJEB4632 865 246 1.757225 4.3227735 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 344 3.27e-90   NTclustered gi|511487963|gb|JX898537.1| 1260765 g827 i0 91.935 65.7073170731707 248 17 100 3 1 246 180 426 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 16164 344 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
12469120 12469120 PRJEB4632_P_NODE_550_length_301_cov_1.701754_g512_i0 PRJEB4632 550 301 1.701754 5.12227954 Lamproderma 142788 Evosea other_Eukaryota 490 5.01e-134   NTclustered gi|1478167968|gb|MH930618.1| 142791 g512 i0 96.053 100.986710963455 304 7 100 5 1 301 54 355 Lamproderma ovoideum isolate MSU8503 small subunit ribosomal RNA gene, partial sequence blastn 30397 490 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Lamproderma Lamproderma ovoideum
17913089 17913089 PRJEB4632_P_NODE_415_length_343_cov_1.137037_g377_i0 PRJEB4632 415 343 1.137037 3.90003691 Echinostelium minutum 300235 Evosea other_Eukaryota 612 1.19e-170   NTclustered gi|210062522|gb|AY842034.2| 300235 g377 i0 98.834 19.1253644314869 343 4 100 0 1 343 2226 1884 Echinostelium minutum strain ATCC 22345 18S ribosomal RNA gene, partial sequence blastn 6560 612 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium minutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;