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contig_metadata

18 rows where bioproject = "PRJEB43370" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 18 ✖

tax_clade 1

bioproject 1

  • PRJEB43370 · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
60184 60184 PRJEB43370_P_NODE_1741_length_332_cov_1.466431_g1698_i0 PRJEB43370 1741 332 1.466431 4.86855092 Nolandella sp. LAK-2 1908693 Tubulinea other_Eukaryota 168 1.12e-49   NR AFX73095.1 1260117 g1698 i0 68.8 3.94879518072289 109 34 98.5 0 327 1 48 156 AFX73095.1 elongation factor 2 alpha, partial [Nolandella sp. LAK-2012] diamond 1311 168 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. LAK-2012
1334504 1334504 PRJEB43370_P_NODE_1822_length_323_cov_1.937956_g1779_i0 PRJEB43370 1822 323 1.937956 6.25959788 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 545 1.14e-150   NTclustered gi|1042160945|dbj|LC102279.1| 1789826 g1779 i0 97.492 6.43034055727554 319 8 99 0 5 323 509 191 Copromyxa sp. MK-2016 gene for elongation factor 2 alpha, partial cds, strain: ZEB1 blastn 2077 545 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
5162544 5162544 PRJEB43370_P_NODE_65_length_1410_cov_8.733284_g51_i0 PRJEB43370 65 1410 8.733284 123.1393044 Copromyxa protea 931554 Tubulinea other_Eukaryota 1563 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g51 i0 87.222 27.4234042553191 1393 152 97 16 15 1385 1 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 38667 1563 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
7712628 7712628 PRJEB43370_P_NODE_7847_length_168_cov_1.310924_g7804_i0 PRJEB43370 7847 168 1.310924 2.20235232 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 311 2.11e-80   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g7804 i0 100 76.3333333333333 168 0 100 0 1 168 1721 1554 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 12824 311 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
8987283 8987283 PRJEB43370_P_NODE_10168_length_163_cov_1.350877_g10125_i0 PRJEB43370 10168 163 1.350877 2.20192951 Amoeba proteus 5775 Tubulinea other_Eukaryota 94.4 8.42e-21   NR AAD33718.1 5775 g10125 i0 87.5 1.03067484662577 56 5 99.4 1 162 1 180 235 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 168 94.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
11538444 11538444 PRJEB43370_P_NODE_790_length_491_cov_2.115385_g747_i0 PRJEB43370 790 491 2.115385 10.38654035 Amoeba proteus 5775 Tubulinea other_Eukaryota 294 1.1199999999999999e-96   NR AAP88974.1 5775 g747 i0 85.1 0.983706720977597 161 24 98.4 0 7 489 1 161 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 483 294 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
15362386 15362386 PRJEB43370_P_NODE_2053_length_303_cov_2.181102_g2010_i0 PRJEB43370 2053 303 2.181102 6.6087390600000004 Amoeba proteus 5775 Tubulinea other_Eukaryota 164 9.66e-47   NR AAP88974.1 5775 g2010 i0 81.3 0.95049504950495 96 18 95 0 303 16 295 390 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 288 164 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
15362398 15362398 PRJEB43370_P_NODE_333_length_728_cov_3.811487_g294_i0 PRJEB43370 333 728 3.811487 27.74762536 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 1158 0   NTclustered gi|1042160935|dbj|LC102274.1| 1789826 g294 i0 98.333 96.6153846153846 660 11 91 0 1 660 136 795 Copromyxa sp. MK-2016 gene for actin, partial cds, strain: ZEB1_cl3 blastn 70336 1158 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
16636973 16636973 PRJEB43370_P_NODE_1534_length_353_cov_2.907895_g1491_i0 PRJEB43370 1534 353 2.907895 10.26486935 Amoeba proteus 5775 Tubulinea other_Eukaryota 208 1.14e-63   NR AAP88974.1 5775 g1491 i0 87.2 0.994334277620397 117 15 99.4 0 351 1 172 288 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 351 208 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
18841610 18841610 PRJEB43370_P_NODE_3935_length_223_cov_1.488506_g3892_i0 PRJEB43370 3935 223 1.488506 3.31936838 Chaos carolinense 160823 Tubulinea other_Eukaryota 125 1.01e-34   NR AFX73058.1 160823 g3892 i0 82.4 0.995515695067265 74 13 99.6 0 223 2 49 122 AFX73058.1 14-3-3 protein, partial [Chaos carolinense] diamond 222 125 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
21736941 21736941 PRJEB43370_P_NODE_9978_length_164_cov_0.904348_g9935_i0 PRJEB43370 9978 164 0.904348 1.48313072 Nolandella sp. LAK-2012 1260117 Tubulinea other_Eukaryota 117 4.79e-22   NTclustered gi|421976359|gb|JQ519496.1| 1260117 g9935 i0 85.586 6.6280487804878 111 16 68 0 6 116 626 516 Nolandella sp. LAK-2012 elongation factor 2 alpha gene, partial cds blastn 1087 117 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. LAK-2012
24285970 24285970 PRJEB43370_P_NODE_1020_length_431_cov_2.400524_g977_i0 PRJEB43370 1020 431 2.400524 10.34625844 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 797 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g977 i0 100 69.0069605568445 431 0 100 0 1 431 574 1004 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 29742 797 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
26843784 26843784 PRJEB43370_P_NODE_6341_length_182_cov_1.563910_g6298_i0 PRJEB43370 6341 182 1.56391 2.8463162 Amoeba proteus 5775 Tubulinea other_Eukaryota 101 4.039999999999999e-23   NR AAD33718.1 5775 g6298 i0 84.5 0.956043956043956 58 9 95.6 0 2 175 694 751 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 174 101 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27254617 27254617 PRJEB43370_P_NODE_10703_length_162_cov_0.920354_g10660_i0 PRJEB43370 10703 162 0.920354 1.49097348 Amoeba proteus 5775 Tubulinea other_Eukaryota 97.1 5.25e-22   NR AAD37351.1 5775 g10660 i0 88.5 0.962962962962963 52 6 96.3 0 162 7 142 193 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 156 97.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28233374 28233374 PRJEB43370_P_NODE_6506_length_180_cov_1.190840_g6463_i0 PRJEB43370 6506 180 1.19084 2.143512 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 58.9 3.07e-8   NR AAY34140.1 5778 g6463 i0 51.7 0.966666666666667 58 27 96.7 1 174 1 70 126 AAY34140.1 Nop58p, partial [Vermamoeba vermiformis] diamond 174 58.9 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29149710 29149710 PRJEB43370_P_NODE_9989_length_164_cov_0.904348_g9946_i0 PRJEB43370 9989 164 0.904348 1.48313072 Amoeba proteus 5775 Tubulinea other_Eukaryota 85.1 1.49e-17   NR AKN09691.1 5775 g9946 i0 64.8 0.98780487804878 54 19 98.8 0 162 1 811 864 AKN09691.1 Tom70 [Amoeba proteus] diamond 162 85.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30886570 30886570 PRJEB43370_P_NODE_7294_length_170_cov_1.173554_g7251_i0 PRJEB43370 7294 170 1.173554 1.9950418 Amoeba proteus 5775 Tubulinea other_Eukaryota 81.3 3.08e-16   NR AAD37351.1 5775 g7251 i0 73.6 0.935294117647059 53 13 93.5 1 11 169 86 137 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 159 81.3 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32656963 32656963 PRJEB43370_P_NODE_3900_length_224_cov_1.485714_g3857_i0 PRJEB43370 3900 224 1.485714 3.32799936 Amoeba proteus 5775 Tubulinea other_Eukaryota 133 1.35e-37   NR AAW58116.1 5775 g3857 i0 83.6 0.977678571428571 73 12 97.8 0 224 6 59 131 AAW58116.1 peroxiredoxin, partial [Amoeba proteus] diamond 219 133 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;