contig_metadata
12 rows where bioproject = "PRJEB43370", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 989937 | 989937 | PRJEB43370_P_NODE_10561_length_162_cov_1.840708_g10518_i0 | PRJEB43370 | 10561 | 162 | 1.840708 | 2.98194696 | Bdellovibrio | 958 | Bacteria | Bacteria | 224 | 2.7e-54 | NTclustered | gi|2800920897|gb|CP168968.1| | 959 | g10518 | i0 | 92.857 | 34.4938271604938 | 154 | 11 | 95 | 0 | 9 | 162 | 779255 | 779102 | Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome | blastn | 5588 | 224 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 17911768 | 17911768 | PRJEB43370_P_NODE_3615_length_231_cov_1.142857_g3572_i0 | PRJEB43370 | 3615 | 231 | 1.142857 | 2.63999967 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 138 | 3.8099999999999996e-38 | NR | MCB0370750.1 | 2053517 | g3572 | i0 | 85.7 | 1 | 77 | 10 | 100 | 1 | 231 | 1 | 74 | 149 | MCB0370750.1 inositol-3-phosphate synthase [Bdellovibrionales bacterium] | diamond | 231 | 138 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 27475869 | 27475869 | PRJEB43370_P_NODE_8303_length_167_cov_1.245763_g8260_i0 | PRJEB43370 | 8303 | 167 | 1.245763 | 2.08042421 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 52 | 8.77e-7 | NR | MCB0369089.1 | 2053517 | g8260 | i0 | 75 | 0.574850299401198 | 32 | 8 | 57.5 | 0 | 97 | 2 | 1 | 32 | MCB0369089.1 hypothetical protein [Bdellovibrionales bacterium] | diamond | 96 | 52 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 28012825 | 28012825 | PRJEB43370_P_NODE_8305_length_167_cov_1.228814_g8262_i0 | PRJEB43370 | 8305 | 167 | 1.228814 | 2.05211938 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 118 | 4.809999999999999e-31 | NR | MCB0368832.1 | 2053517 | g8262 | i0 | 94.5 | 0.988023952095808 | 55 | 3 | 98.8 | 0 | 166 | 2 | 37 | 91 | MCB0368832.1 ThiF family adenylyltransferase [Bdellovibrionales bacterium] | diamond | 165 | 118 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 28391505 | 28391505 | PRJEB43370_P_NODE_3226_length_243_cov_1.072165_g3183_i0 | PRJEB43370 | 3226 | 243 | 1.072165 | 2.60536095 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 50.8 | 2.84e-5 | NR | MDH5582071.1 | 2053517 | g3183 | i0 | 30.8 | 1.12345679012346 | 91 | 46 | 98.8 | 3 | 243 | 4 | 63 | 147 | MDH5582071.1 cupin-like domain-containing protein [Bdellovibrionales bacterium] | diamond | 273 | 50.8 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 28549590 | 28549590 | PRJEB43370_P_NODE_1467_length_360_cov_1.504823_g1424_i0 | PRJEB43370 | 1467 | 360 | 1.504823 | 5.4173628 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 121 | 2.95e-29 | NR | MBK9041010.1 | 2053517 | g1424 | i0 | 51.3 | 2.94166666666667 | 119 | 57 | 99.2 | 1 | 360 | 4 | 57 | 174 | MBK9041010.1 bifunctional aspartate kinase/homoserine dehydrogenase I [Bdellovibrionales bacterium] | diamond | 1059 | 121 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 28637667 | 28637667 | PRJEB43370_P_NODE_9247_length_165_cov_0.896552_g9204_i0 | PRJEB43370 | 9247 | 165 | 0.896552 | 1.4793108 | Bacteria | 2 | Bacteria | Bacteria | 65.1 | 1.43e-10 | NR | MFM6928627.1 | 28201 | g9204 | i0 | 52.8 | 14.2363636363636 | 53 | 25 | 96.4 | 0 | 6 | 164 | 16 | 68 | MFM6928627.1 lipoate--protein ligase [Bdellovibrio sp.] | diamond | 2349 | 65.1 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. | ||
| 28865088 | 28865088 | PRJEB43370_P_NODE_3248_length_242_cov_1.347150_g3205_i0 | PRJEB43370 | 3248 | 242 | 1.34715 | 3.260103 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 117 | 1.4599999999999999e-31 | NR | MCB0369136.1 | 2053517 | g3205 | i0 | 68.8 | 0.991735537190083 | 80 | 25 | 99.2 | 0 | 242 | 3 | 57 | 136 | MCB0369136.1 hypothetical protein [Bdellovibrionales bacterium] | diamond | 240 | 117 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 29780745 | 29780745 | PRJEB43370_P_NODE_3411_length_237_cov_1.382979_g3368_i0 | PRJEB43370 | 3411 | 237 | 1.382979 | 3.27766023 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 137 | 6.14e-38 | NR | MCB0369784.1 | 2053517 | g3368 | i0 | 78.5 | 1 | 79 | 17 | 100 | 0 | 237 | 1 | 36 | 114 | MCB0369784.1 insulinase family protein [Bdellovibrionales bacterium] | diamond | 237 | 137 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 29938814 | 29938814 | PRJEB43370_P_NODE_5911_length_188_cov_1.294964_g5868_i0 | PRJEB43370 | 5911 | 188 | 1.294964 | 2.43453232 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 93.2 | 2.0399999999999998e-23 | NR | MCB0369464.1 | 2053517 | g5868 | i0 | 83.9 | 0.893617021276596 | 56 | 9 | 89.4 | 0 | 181 | 14 | 2 | 57 | MCB0369464.1 hypothetical protein [Bdellovibrionales bacterium] | diamond | 168 | 93.2 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 31645158 | 31645158 | PRJEB43370_P_NODE_10257_length_163_cov_0.912281_g10214_i0 | PRJEB43370 | 10257 | 163 | 0.912281 | 1.48701803 | Bdellovibrionales bacterium RIFOXYD1_FULL_55_31 | 1797404 | Bacteria | Bacteria | 58.2 | 4.43e-8 | NR | OFZ83107.1 | 1797404 | g10214 | i0 | 56.9 | 0.938650306748466 | 51 | 21 | 93.9 | 1 | 3 | 155 | 1082 | 1131 | OFZ83107.1 MAG: hypothetical protein A2603_05625 [Bdellovibrionales bacterium RIFOXYD1_FULL_55_31] | diamond | 153 | 58.2 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium RIFOXYD1_FULL_55_31 | ||||
| 32341560 | 32341560 | PRJEB43370_P_NODE_6919_length_174_cov_1.664000_g6876_i0 | PRJEB43370 | 6919 | 174 | 1.664 | 2.89536 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 53.9 | 1.63e-7 | NR | MCB0369525.1 | 2053517 | g6876 | i0 | 52 | 0.862068965517241 | 50 | 24 | 86.2 | 0 | 151 | 2 | 12 | 61 | MCB0369525.1 hypothetical protein [Bdellovibrionales bacterium] | diamond | 150 | 53.9 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;