RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB43370", tax_kingdom = "Methanobacteriati" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJEB43370 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26653328 26653328 PRJEB43370_P_NODE_6221_length_184_cov_1.259259_g6178_i0 PRJEB43370 6221 184 1.259259 2.31703656 Halonotius sp. J 2218529 Archaea Archaea 43.9 0.00667   NR ERH05107.1 1070774 g6178 i0 40.4 3.60326086956522 52 27 84.8 1 5 160 87 134 ERH05107.1 MAG: ABC-type transport system, periplasmic component/surface lipoprotein [Halonotius sp. J07HN4] diamond 663 43.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius sp. J07HN4
26994884 26994884 PRJEB43370_P_NODE_5462_length_194_cov_1.434483_g5419_i0 PRJEB43370 5462 194 1.434483 2.78289702 Methanobacteriati 3366610 Archaea Archaea 105 7.26e-26   NR MBH33411.1 2026739 g5419 i0 76.6 3.94329896907217 64 15 99 0 1 192 223 286 MBH33411.1 3,4-dihydroxy-2-butanone-4-phosphate synthase [Methanobacteriota archaeon] diamond 765 105 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
31455608 31455608 PRJEB43370_P_NODE_3236_length_242_cov_1.886010_g3193_i0 PRJEB43370 3236 242 1.88601 4.5641442 Methanocaldococcus villosus 667126 Archaea Archaea 56.2 1.41e-7   NR WP_004592618.1 667126 g3193 i0 40 0.991735537190083 80 31 99.2 2 242 3 78 140 WP_004592618.1 30S ribosomal protein S19e [Methanocaldococcus villosus] diamond 240 56.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus villosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;