RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB43370", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB43370 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3886339 3886339 PRJEB43370_P_NODE_6384_length_182_cov_1.172932_g6341_i0 PRJEB43370 6384 182 1.172932 2.13473624 Olpidium bornovanus 278681 Fungi Fungi 96.7 1.53e-23   NR KAG5463654.1 278681 g6341 i0 80 3.87362637362637 60 12 98.9 0 180 1 79 138 KAG5463654.1 MAG: ribosomal protein L18e/L15P, partial [Olpidium bornovanus] diamond 705 96.7 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
8987338 8987338 PRJEB43370_P_NODE_5108_length_200_cov_1.377483_g5065_i0 PRJEB43370 5108 200 1.377483 2.754966 Olpidium brassicae 70189 Fungi Fungi 104 2.9299999999999998e-24   NR BAL15353.1 70189 g5065 i0 74.2 0.99 66 17 99 0 199 2 8 73 BAL15353.1 translation elongation factor 2, partial [Olpidium brassicae] diamond 198 104 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
27248057 27248057 PRJEB43370_P_NODE_4863_length_204_cov_2.012903_g4820_i0 PRJEB43370 4863 204 2.012903 4.10632212 Eukaryota 2759 Fungi Fungi 105 1.81e-25   NR KAG5457429.1 278681 g4820 i0 63 3.94117647058824 73 21 98.5 1 1 201 211 283 KAG5457429.1 MAG: WD40 repeat-like protein [Olpidium bornovanus] diamond 804 106 0.990566037735849 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;