RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB43370", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJEB43370 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2610179 2610179 PRJEB43370_P_NODE_9903_length_164_cov_0.904348_g9860_i0 PRJEB43370 9903 164 0.904348 1.48313072 Spiroplasma endosymbiont of Notiophilus biguttatus 3066285 Bacteria Bacteria 52.8 0.014   NTclustered gi|2719904880|emb|OZ034993.1| 3066285 g9860 i0 100 0.170731707317073 28 0 17 0 39 66 773620 773647 Spiroplasma endosymbiont of Notiophilus biguttatus isolate 54805 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Notiophilus biguttatus
4817798 4817798 PRJEB43370_P_NODE_5084_length_200_cov_2.066225_g5041_i0 PRJEB43370 5084 200 2.066225 4.13245 FCB group 1783270 Bacteria Bacteria 364 1.96e-96   NTclustered gi|281186802|gb|GU227407.1| 2099 g5041 i0 99.5 100 200 1 100 0 1 200 545 744 Mycoplasma hyopneumoniae strain USP14P 16S ribosomal RNA gene, partial sequence blastn 20000 364 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyopneumoniae
6093063 6093063 PRJEB43370_P_NODE_5865_length_188_cov_2.244604_g5822_i0 PRJEB43370 5865 188 2.244604 4.21985552 Mollicutes 31969 Bacteria Bacteria 348 1.84e-91   NTclustered gi|1958638472|gb|MW498281.1| 2100 g5822 i0 100 95.0904255319149 188 0 100 0 1 188 1966 2153 Mesomycoplasma hyorhinis strain MycSu21 23S ribosomal RNA gene, partial sequence blastn 17877 348 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
13743414 13743414 PRJEB43370_P_NODE_3951_length_223_cov_1.195402_g3908_i0 PRJEB43370 3951 223 1.195402 2.66574646 FCB group 1783270 Bacteria Bacteria 412 7.88e-111   NTclustered gi|1720621726|gb|CP035041.1| 2100 g3908 i0 100 99.865470852017907 223 0 100 0 1 223 429046 428824 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 22270 412 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
13743415 13743415 PRJEB43370_P_NODE_4291_length_215_cov_1.879518_g4248_i0 PRJEB43370 4291 215 1.879518 4.0409637 Mollicutes 31969 Bacteria Bacteria 398 2.1099999999999997e-106   NTclustered gi|1958638505|gb|MW498314.1| 2100 g4248 i0 100 99.3488372093023 215 0 100 0 1 215 2624 2838 Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence blastn 21360 398 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
15362442 15362442 PRJEB43370_P_NODE_9013_length_166_cov_0.888889_g8970_i0 PRJEB43370 9013 166 0.888889 1.47555574 Malacoplasma penetrans 28227 Bacteria Bacteria 86.1 1.37e-12   NTclustered gi|47118307|dbj|BA000026.2| 272633 g8970 i0 78 0.903614457831325 150 23 87 10 20 164 307399 307543 Mycoplasma penetrans HF-2 DNA, complete genome blastn 150 86.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma penetrans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;