contig_metadata
27 rows where bioproject = "PRJEB43370" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6438384 | 6438384 | PRJEB43370_P_NODE_7566_length_169_cov_0.866667_g7523_i0 | PRJEB43370 | 7566 | 169 | 0.866667 | 1.46466723 | uncultured Parachlamydiaceae bacterium | 464461 | Bacteria | Bacteria | 187 | 3.71e-43 | NTclustered | gi|2874253811|emb|OY969795.1| | 464461 | g7523 | i0 | 86.857 | 134.526627218935 | 175 | 13 | 100 | 7 | 1 | 169 | 2059568 | 2059398 | MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 | blastn | 22735 | 187 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | uncultured Parachlamydiaceae bacterium | ||
| 7712599 | 7712599 | PRJEB43370_P_NODE_4847_length_205_cov_1.000000_g4804_i0 | PRJEB43370 | 4847 | 205 | 1 | 2.05 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 121 | 4.839999999999999e-23 | NTclustered | gi|2874253952|emb|OY970277.1| | 412056 | g4804 | i0 | 77.941 | 30.380487804878 | 204 | 37 | 98 | 8 | 1 | 200 | 3078687 | 3078886 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 | blastn | 6228 | 121 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 7712633 | 7712633 | PRJEB43370_P_NODE_8287_length_167_cov_1.322034_g8244_i0 | PRJEB43370 | 8287 | 167 | 1.322034 | 2.20779678 | Phycisphaerae bacterium | 2026778 | Bacteria | Bacteria | 85.5 | 1.14e-17 | NR | MBP8303816.1 | 2026778 | g8244 | i0 | 70.9 | 8.89221556886227 | 55 | 16 | 98.8 | 0 | 167 | 3 | 213 | 267 | MBP8303816.1 molecular chaperone DnaK [Phycisphaerae bacterium] | diamond | 1485 | 85.5 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerae bacterium | ||||
| 13743416 | 13743416 | PRJEB43370_P_NODE_4571_length_210_cov_1.285714_g4528_i0 | PRJEB43370 | 4571 | 210 | 1.285714 | 2.6999994 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 81.3 | 4.41e-18 | NR | MBM3989060.1 | 2026780 | g4528 | i0 | 60.9 | 2.71428571428571 | 64 | 25 | 91.4 | 0 | 3 | 194 | 15 | 78 | MBM3989060.1 RNA-binding protein [Planctomycetota bacterium] | diamond | 570 | 81.3 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 23012187 | 23012187 | PRJEB43370_P_NODE_7539_length_169_cov_0.866667_g7496_i0 | PRJEB43370 | 7539 | 169 | 0.866667 | 1.46466723 | Candidatus Protochlamydia naegleriophila | 389348 | Bacteria | Bacteria | 257 | 2.79e-64 | NTclustered | gi|971146634|emb|LN879502.1| | 389348 | g7496 | i0 | 94.083 | 25.7751479289941 | 169 | 10 | 100 | 0 | 1 | 169 | 1250508 | 1250676 | Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK | blastn | 4356 | 257 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia naegleriophila | |
| 26621862 | 26621862 | PRJEB43370_P_NODE_7761_length_169_cov_0.866667_g7718_i0 | PRJEB43370 | 7761 | 169 | 0.866667 | 1.46466723 | Terrimicrobium sacchariphilum | 690879 | Bacteria | Bacteria | 47.4 | 3.04e-4 | NR | WP_075079027.1 | 690879 | g7718 | i0 | 58.8 | 0.603550295857988 | 34 | 14 | 60.4 | 0 | 167 | 66 | 290 | 323 | WP_075079027.1 hypothetical protein [Terrimicrobium sacchariphilum] | diamond | 102 | 47.4 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Terrimicrobiia | Terrimicrobiales | Terrimicrobiaceae | Terrimicrobium | Terrimicrobium sacchariphilum | |
| 27349787 | 27349787 | PRJEB43370_P_NODE_5943_length_187_cov_2.260870_g5900_i0 | PRJEB43370 | 5943 | 187 | 2.26087 | 4.2278269 | Tichowtungia aerotolerans | 2697043 | Bacteria | Bacteria | 94.7 | 1.32e-23 | NR | WP_160629922.1 | 2697043 | g5900 | i0 | 68.9 | 7.74866310160428 | 61 | 19 | 97.9 | 0 | 4 | 186 | 3 | 63 | WP_160629922.1 peptidylprolyl isomerase [Tichowtungia aerotolerans] | diamond | 1449 | 94.7 | 1 | Bacteria | PVC group | Pseudomonadati | Kiritimatiellota | Tichowtungiia | Tichowtungiales | Tichowtungiaceae | Tichowtungia | Tichowtungia aerotolerans | |
| 27627250 | 27627250 | PRJEB43370_P_NODE_4364_length_214_cov_1.260606_g4321_i0 | PRJEB43370 | 4364 | 214 | 1.260606 | 2.69769684 | Bacteria | 2 | Bacteria | Bacteria | 101 | 1.0399999999999997e-23 | NR | MFA5258231.1 | 2026772 | g4321 | i0 | 65.7 | 5.60747663551402 | 67 | 23 | 93.9 | 0 | 202 | 2 | 3 | 69 | MFA5258231.1 malate dehydrogenase [Opitutales bacterium] | diamond | 1200 | 101 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutales bacterium | |||
| 27823379 | 27823379 | PRJEB43370_P_NODE_3904_length_224_cov_1.251429_g3861_i0 | PRJEB43370 | 3904 | 224 | 1.251429 | 2.80320096 | Simkania sp. | 34094 | Bacteria | Bacteria | 130 | 7.97e-36 | NR | MCB1084310.1 | 34094 | g3861 | i0 | 82.4 | 0.991071428571429 | 74 | 13 | 99.1 | 0 | 224 | 3 | 15 | 88 | MCB1084310.1 hypothetical protein [Simkania sp.] | diamond | 222 | 130 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Simkaniaceae | Simkania | Simkania sp. | |
| 27879678 | 27879678 | PRJEB43370_P_NODE_5905_length_188_cov_1.424460_g5862_i0 | PRJEB43370 | 5905 | 188 | 1.42446 | 2.6779848 | Bacteria | 2 | Bacteria | Bacteria | 57.8 | 8.93e-8 | NR | MCX7805658.1 | 2026780 | g5862 | i0 | 41.9 | 4.56382978723404 | 62 | 31 | 98.9 | 1 | 188 | 3 | 382 | 438 | MCX7805658.1 SMP-30/gluconolactonase/LRE family protein [Planctomycetota bacterium] | diamond | 858 | 58.2 | 0.993127147766323 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 28006190 | 28006190 | PRJEB43370_P_NODE_6545_length_179_cov_1.600000_g6502_i0 | PRJEB43370 | 6545 | 179 | 1.6 | 2.864 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 77.4 | 9.41e-15 | NR | HUO08880.1 | 2026778 | g6502 | i0 | 62.7 | 7.91061452513966 | 59 | 21 | 98.9 | 1 | 177 | 1 | 127 | 184 | HUO08880.1 phosphoenolpyruvate carboxykinase (GTP) [Phycisphaerae bacterium] | diamond | 1416 | 77.4 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerae bacterium | ||||
| 28258393 | 28258393 | PRJEB43370_P_NODE_10166_length_163_cov_1.359649_g10123_i0 | PRJEB43370 | 10166 | 163 | 1.359649 | 2.21622787 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 48.1 | 1.6e-4 | NR | WP_149113609.1 | 2598579 | g10123 | i0 | 48 | 1.78527607361963 | 50 | 21 | 92 | 2 | 7 | 156 | 799 | 843 | WP_149113609.1 FAD-binding protein [Limnoglobus roseus] | diamond | 291 | 48.5 | 0.991752577319588 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Limnoglobus | Limnoglobus roseus | |
| 28328257 | 28328257 | PRJEB43370_P_NODE_3986_length_222_cov_1.202312_g3943_i0 | PRJEB43370 | 3986 | 222 | 1.202312 | 2.66913264 | Pirellulaceae bacterium | 2699754 | Bacteria | Bacteria | 42.7 | 0.0288 | NR | MDX1929322.1 | 2699754 | g3943 | i0 | 39.1 | 0.932432432432432 | 69 | 36 | 85.1 | 1 | 214 | 26 | 172 | 240 | MDX1929322.1 SdrD B-like domain-containing protein [Pirellulaceae bacterium] | diamond | 207 | 42.7 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Pirellulaceae bacterium | ||
| 28612581 | 28612581 | PRJEB43370_P_NODE_1507_length_356_cov_1.084691_g1464_i0 | PRJEB43370 | 1507 | 356 | 1.084691 | 3.86149996 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 43.9 | 0.0453 | NR | MDP6113334.1 | 2026780 | g1464 | i0 | 34.8 | 0.943820224719101 | 112 | 61 | 92.7 | 5 | 4 | 333 | 195 | 296 | MDP6113334.1 hypothetical protein [Planctomycetota bacterium] | diamond | 336 | 43.9 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 28738878 | 28738878 | PRJEB43370_P_NODE_8067_length_168_cov_0.873950_g8024_i0 | PRJEB43370 | 8067 | 168 | 0.87395 | 1.468236 | Planctomycetia bacterium | 2052181 | Bacteria | Bacteria | 80.1 | 8.96e-16 | NR | MFM8494351.1 | 2052181 | g8024 | i0 | 67.3 | 1.96428571428571 | 55 | 17 | 96.4 | 1 | 166 | 5 | 466 | 520 | MFM8494351.1 S8 family serine peptidase [Planctomycetia bacterium] | diamond | 330 | 80.1 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetia bacterium | ||||
| 28770355 | 28770355 | PRJEB43370_P_NODE_8087_length_168_cov_0.873950_g8044_i0 | PRJEB43370 | 8087 | 168 | 0.87395 | 1.468236 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 46.2 | 7.99e-4 | NR | MCW8133401.1 | 2026780 | g8044 | i0 | 45.7 | 2.41071428571429 | 46 | 20 | 82.1 | 2 | 155 | 18 | 207 | 247 | MCW8133401.1 hypothetical protein [Planctomycetota bacterium] | diamond | 405 | 46.2 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 28770358 | 28770358 | PRJEB43370_P_NODE_8947_length_166_cov_0.888889_g8904_i0 | PRJEB43370 | 8947 | 166 | 0.888889 | 1.47555574 | Akkermansiaceae bacterium | 2562705 | Bacteria | Bacteria | 79.7 | 3.44e-16 | NR | MDB4508061.1 | 2562705 | g8904 | i0 | 58.2 | 1.96987951807229 | 55 | 23 | 99.4 | 0 | 2 | 166 | 73 | 127 | MDB4508061.1 endonuclease/exonuclease/phosphatase family protein [Akkermansiaceae bacterium] | diamond | 327 | 79.7 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansiaceae bacterium | ||
| 29464644 | 29464644 | PRJEB43370_P_NODE_10410_length_163_cov_0.912281_g10367_i0 | PRJEB43370 | 10410 | 163 | 0.912281 | 1.48701803 | Phycisphaerae bacterium | 2026778 | Bacteria | Bacteria | 50.1 | 3.16e-5 | NR | MCG3131231.1 | 2026778 | g10367 | i0 | 52.2 | 1.65644171779141 | 46 | 21 | 84.7 | 1 | 161 | 24 | 270 | 314 | MCG3131231.1 hypothetical protein [Phycisphaerae bacterium] | diamond | 270 | 50.1 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerae bacterium | ||||
| 29590971 | 29590971 | PRJEB43370_P_NODE_6630_length_178_cov_1.612403_g6587_i0 | PRJEB43370 | 6630 | 178 | 1.612403 | 2.87007734 | Phycisphaerales bacterium | 2052180 | Bacteria | Bacteria | 98.6 | 1.2e-22 | NR | MEQ8850611.1 | 2052180 | g6587 | i0 | 74.6 | 0.99438202247191 | 59 | 15 | 99.4 | 0 | 2 | 178 | 81 | 139 | MEQ8850611.1 peptidylprolyl isomerase [Phycisphaerales bacterium] | diamond | 177 | 98.6 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaerales bacterium | |||
| 29710587 | 29710587 | PRJEB43370_P_NODE_7970_length_168_cov_0.873950_g7927_i0 | PRJEB43370 | 7970 | 168 | 0.87395 | 1.468236 | Alienimonas | 2714737 | Bacteria | Bacteria | 51.6 | 8.96e-6 | NR | MEM9703337.1 | 2026780 | g7927 | i0 | 53.7 | 1.46428571428571 | 41 | 19 | 73.2 | 0 | 123 | 1 | 83 | 123 | MEM9703337.1 patatin-like phospholipase family protein [Planctomycetota bacterium] | diamond | 246 | 52 | 0.992307692307692 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 30096543 | 30096543 | PRJEB43370_P_NODE_752_length_502_cov_1.375276_g709_i0 | PRJEB43370 | 752 | 502 | 1.375276 | 6.90388552 | Pirellulaceae bacterium | 2699754 | Bacteria | Bacteria | 46.2 | 0.0302 | NR | MEZ6091142.1 | 2699754 | g709 | i0 | 47.5 | 0.239043824701195 | 40 | 21 | 23.9 | 0 | 396 | 277 | 315 | 354 | MEZ6091142.1 hypothetical protein [Pirellulaceae bacterium] | diamond | 120 | 46.2 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Pirellulaceae bacterium | ||
| 30507452 | 30507452 | PRJEB43370_P_NODE_8053_length_168_cov_0.873950_g8010_i0 | PRJEB43370 | 8053 | 168 | 0.87395 | 1.468236 | Phycisphaerales bacterium | 2052180 | Bacteria | Bacteria | 42 | 0.0255 | NR | MBZ0171110.1 | 2052180 | g8010 | i0 | 45.5 | 0.982142857142857 | 55 | 28 | 94.6 | 1 | 9 | 167 | 78 | 132 | MBZ0171110.1 cadherin-like domain-containing protein [Phycisphaerales bacterium] | diamond | 165 | 42 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaerales bacterium | |||
| 31448948 | 31448948 | PRJEB43370_P_NODE_9836_length_164_cov_0.904348_g9793_i0 | PRJEB43370 | 9836 | 164 | 0.904348 | 1.48313072 | Bacteria | 2 | Bacteria | Bacteria | 50.8 | 1.78e-5 | NR | MBI5764236.1 | 2026780 | g9793 | i0 | 55.6 | 4.0609756097561 | 54 | 19 | 98.8 | 2 | 164 | 3 | 1227 | 1275 | MBI5764236.1 HYR domain-containing protein [Planctomycetota bacterium] | diamond | 666 | 51.2 | 0.9921875 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 31512335 | 31512335 | PRJEB43370_P_NODE_6876_length_175_cov_1.238095_g6833_i0 | PRJEB43370 | 6876 | 175 | 1.238095 | 2.16666625 | Rubripirellula | 1579505 | Bacteria | Bacteria | 42.4 | 0.0211 | NR | RLT13610.1 | 2026780 | g6833 | i0 | 34.5 | 2.98285714285714 | 58 | 37 | 99.4 | 1 | 174 | 1 | 641 | 697 | RLT13610.1 MAG: FAD-binding protein [Planctomycetota bacterium] | diamond | 522 | 42.4 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 31550663 | 31550663 | PRJEB43370_P_NODE_8036_length_168_cov_0.873950_g7993_i0 | PRJEB43370 | 8036 | 168 | 0.87395 | 1.468236 | Candidatus Omnitrophota bacterium | 2035772 | Bacteria | Bacteria | 53.9 | 9.92e-8 | NR | MFQ5680630.1 | 2035772 | g7993 | i0 | 52.8 | 2.83928571428571 | 53 | 23 | 92.9 | 2 | 156 | 1 | 18 | 69 | MFQ5680630.1 acyl carrier protein [Candidatus Omnitrophota bacterium] | diamond | 477 | 53.9 | 1 | Bacteria | PVC group | Pseudomonadati | Candidatus Omnitrophota | Candidatus Omnitrophota bacterium | |||||
| 31803324 | 31803324 | PRJEB43370_P_NODE_8057_length_168_cov_0.873950_g8014_i0 | PRJEB43370 | 8057 | 168 | 0.87395 | 1.468236 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 45.4 | 5.07e-4 | NR | MBI3407224.1 | 2026780 | g8014 | i0 | 42 | 0.892857142857143 | 50 | 29 | 89.3 | 0 | 3 | 152 | 39 | 88 | MBI3407224.1 hypothetical protein [Planctomycetota bacterium] | diamond | 150 | 45.4 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 32214882 | 32214882 | PRJEB43370_P_NODE_9378_length_165_cov_0.896552_g9335_i0 | PRJEB43370 | 9378 | 165 | 0.896552 | 1.4793108 | Gemmata sp. SH-PL17 | 1630693 | Bacteria | Bacteria | 42.7 | 0.0129 | NR | WP_162271578.1 | 1630693 | g9335 | i0 | 52.2 | 4.65454545454545 | 46 | 19 | 80 | 2 | 163 | 32 | 137 | 181 | WP_162271578.1 serine/threonine protein kinase [Gemmata sp. SH-PL17] | diamond | 768 | 43.1 | 0.990719257540603 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Gemmata | Gemmata sp. SH-PL17 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;