RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB43370", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJEB43370 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5162514 5162514 PRJEB43370_P_NODE_3325_length_240_cov_1.089005_g3282_i0 PRJEB43370 3325 240 1.089005 2.613612 Longimicrobiales bacterium 2910168 Bacteria Bacteria 134 7.49e-27   NTclustered gi|2621703510|emb|OY762557.1| 2910168 g3282 i0 81.875 27.6875 160 27 66 2 80 238 547794 547952 MAG: Longimicrobiales bacterium isolate c10e2151-7d97-4465-9cf7-a78a4796a63d genome assembly, chromosome: 1 blastn 6645 134 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
27412973 27412973 PRJEB43370_P_NODE_6663_length_178_cov_1.209302_g6620_i0 PRJEB43370 6663 178 1.209302 2.15255756 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 59.7 1.57e-8   NR HEX9894848.1 2448054 g6620 i0 46.6 0.97752808988764 58 27 97.8 1 3 176 303 356 HEX9894848.1 acylase [Gemmatimonadales bacterium] diamond 174 59.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27563661 27563661 PRJEB43370_P_NODE_604_length_556_cov_1.715976_g562_i0 PRJEB43370 604 556 1.715976 9.54082656 Gemmatimonadota 142182 Bacteria Bacteria 142 1.7199999999999998e-35   NR HEY2377597.1 2026741 g562 i0 47 9.44244604316547 166 78 84.7 5 473 3 599 763 HEY2377597.1 Ig-like domain-containing protein [Gemmatimonadaceae bacterium] diamond 5250 142 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31107570 31107570 PRJEB43370_P_NODE_7575_length_169_cov_0.866667_g7532_i0 PRJEB43370 7575 169 0.866667 1.46466723 Longimicrobiales bacterium 2910168 Bacteria Bacteria 59.7 1.37e-8   NR HSW30076.1 2910168 g7532 i0 59.6 0.834319526627219 47 18 81.7 1 167 30 357 403 HSW30076.1 hypothetical protein [Longimicrobiales bacterium] diamond 141 59.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;