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contig_metadata

10 rows where bioproject = "PRJEB41113", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 10 ✖

tax_phylum 1

  • Bdellovibrionota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJEB41113 · 10 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26994876 26994876 PRJEB41113_S_NODE_2922_length_209_cov_1.563953_g2913_i0 PRJEB41113 2922 209 1.563953 3.26866177 Bdellovibrio 958 Bacteria Bacteria 48.5 1.2e-4   NR WP_415063881.1 28201 g2913 i0 53.8 1.19138755980861 39 18 56 0 118 2 7 45 WP_415063881.1 hypothetical protein [Bdellovibrio sp.] diamond 249 48.9 0.991820040899796 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
28012806 28012806 PRJEB41113_S_NODE_6785_length_175_cov_10.681159_g6776_i0 PRJEB41113 6785 175 10.681159 18.69202825 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 68.6 1.13e-11   NR MCO5113943.1 2026715 g6776 i0 58.5 0.908571428571429 53 22 90.9 0 169 11 239 291 MCO5113943.1 HD domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 159 68.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29464628 29464628 PRJEB41113_S_NODE_13750_length_152_cov_2.965217_g13741_i0 PRJEB41113 13750 152 2.965217 4.50712984 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 58.9 1.34e-8   NR MBA2405754.1 2053517 g13741 i0 50 0.986842105263158 50 25 98.7 0 2 151 130 179 MBA2405754.1 hypothetical protein [Bdellovibrionales bacterium] diamond 150 58.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29685715 29685715 PRJEB41113_S_NODE_7030_length_174_cov_3.167883_g7021_i0 PRJEB41113 7030 174 3.167883 5.51211642 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 84 2.16e-19   NR MEQ1877469.1 3034169 g7021 i0 78.4 1.74137931034483 51 11 87.9 0 1 153 43 93 MEQ1877469.1 XRE family transcriptional regulator [Bdellovibrionia bacterium] diamond 303 84 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
29742297 29742297 PRJEB41113_S_NODE_4730_length_189_cov_3.776316_g4721_i0 PRJEB41113 4730 189 3.776316 7.13723724 Bdellovibrionota 3018035 Bacteria Bacteria 90.5 9.57e-21   NR WP_321393174.1 28202 g4721 i0 84 1.58730158730159 50 8 79.4 0 3 152 151 200 WP_321393174.1 CPBP family intramembrane glutamic endopeptidase [Peredibacter starrii] diamond 300 91.3 0.991237677984666 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
30854896 30854896 PRJEB41113_S_NODE_12974_length_153_cov_2.508621_g12965_i0 PRJEB41113 12974 153 2.508621 3.83819013 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 60.1 8.1e-9   NR MBA2403405.1 2053517 g12965 i0 61.2 0.96078431372549 49 19 96.1 0 3 149 282 330 MBA2403405.1 hypothetical protein [Bdellovibrionales bacterium] diamond 147 60.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31233931 31233931 PRJEB41113_S_NODE_2935_length_208_cov_10.251462_g2926_i0 PRJEB41113 2935 208 10.251462 21.32304096 Halobacteriovorax sp. 2020862 Bacteria Bacteria 70.9 2.62e-12   NR MBH48932.1 2020862 g2926 i0 43.1 0.9375 65 37 93.8 0 3 197 352 416 MBH48932.1 hypothetical protein [Halobacteriovorax sp.] diamond 195 70.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp.
31455599 31455599 PRJEB41113_S_NODE_3776_length_197_cov_3.743750_g3767_i0 PRJEB41113 3776 197 3.74375 7.3751875 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 103 1.65e-25   NR HXH32036.1 2081706 g3767 i0 65.1 0.959390862944162 63 22 95.9 0 191 3 106 168 HXH32036.1 prolipoprotein diacylglyceryl transferase family protein [Bacteriovoracaceae bacterium] diamond 189 103 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31765098 31765098 PRJEB41113_S_NODE_5837_length_182_cov_2.062069_g5828_i0 PRJEB41113 5837 182 2.062069 3.75296558 Bdellovibrio 958 Bacteria Bacteria 117 2.36e-29   NR WP_088616813.1 1732569 g5828 i0 91.7 2.96703296703297 60 5 98.9 0 180 1 79 138 WP_088616813.1 M16 family metallopeptidase [Bdellovibrio sp. SKB1291214] diamond 540 117 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. SKB1291214
31891660 31891660 PRJEB41113_S_NODE_417_length_318_cov_1.747331_g408_i0 PRJEB41113 417 318 1.747331 5.55651258 Bacteria 2 Bacteria Bacteria 165 9.56e-45   NR HXH31216.1 2081706 g408 i0 75.5 3.88679245283019 106 26 100 0 1 318 739 844 HXH31216.1 tetratricopeptide repeat protein [Bacteriovoracaceae bacterium] diamond 1236 165 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;