RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB41113", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJEB41113 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26773641 26773641 PRJEB41113_S_NODE_8981_length_164_cov_1.188976_g8972_i0 PRJEB41113 8981 164 1.188976 1.94992064 Mollicutes 31969 Bacteria Bacteria 50.4 2.43e-5   NR MDD2575587.1 1898209 g8972 i0 49.1 1.9390243902439 53 27 97 0 163 5 301 353 MDD2575587.1 type II CRISPR RNA-guided endonuclease Cas9 [Acholeplasmataceae bacterium] diamond 318 50.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
29142893 29142893 PRJEB41113_S_NODE_10089_length_160_cov_1.195122_g10080_i0 PRJEB41113 10089 160 1.195122 1.9121952 Bacillati 1783272 Bacteria Bacteria 74.7 5.39e-14   NR MCQ2748431.1 2854035 g10080 i0 66 1.9875 53 18 99.4 0 2 160 150 202 MCQ2748431.1 hypothetical protein [Mycoplasmoidaceae bacterium] diamond 318 74.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae   Mycoplasmoidaceae bacterium
30349956 30349956 PRJEB41113_S_NODE_13092_length_153_cov_1.318966_g13083_i0 PRJEB41113 13092 153 1.318966 2.01801798 Candidatus Faecisoma merdavium 2840801 Bacteria Bacteria 68.6 4.38e-12   NR HIS90599.1 2840801 g13083 i0 88.9 0.882352941176471 45 5 88.2 0 153 19 204 248 HIS90599.1 hypothetical protein [Candidatus Faecisoma merdavium] diamond 135 68.6 1 Bacteria   Bacillati Mycoplasmatota       Candidatus Faecisoma Candidatus Faecisoma merdavium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;