RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB41113", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJEB41113 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28795082 28795082 PRJEB41113_S_NODE_7307_length_172_cov_7.777778_g7298_i0 PRJEB41113 7307 172 7.777778 13.37777816 FCB group 1783270 Bacteria Bacteria 101 1.03e-23   NR MCY7417207.1 2026724 g7298 i0 83.6 4.81395348837209 55 9 95.9 0 170 6 319 373 MCY7417207.1 IS3 family transposase [Chloroflexota bacterium] diamond 828 102 0.990196078431373 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30444345 30444345 PRJEB41113_S_NODE_9653_length_161_cov_2.088710_g9644_i0 PRJEB41113 9653 161 2.08871 3.3628231 Phototrophicaceae bacterium 3069543 Bacteria Bacteria 42.7 0.00928   NR HYO05850.1 3069543 g9644 i0 90 0.372670807453416 20 2 37.3 0 149 90 49 68 HYO05850.1 transposase [Phototrophicaceae bacterium] diamond 60 42.7 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae   Phototrophicaceae bacterium
30532263 30532263 PRJEB41113_S_NODE_9953_length_160_cov_2.617886_g9944_i0 PRJEB41113 9953 160 2.617886 4.1886176 Bacteria 2 Bacteria Bacteria 47.4 2.86e-4   NR MDQ3656414.1 2026724 g9944 i0 47.1 3.7875 51 27 95.6 0 8 160 412 462 MDQ3656414.1 PIG-L family deacetylase [Chloroflexota bacterium] diamond 606 47.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32151512 32151512 PRJEB41113_S_NODE_11818_length_155_cov_1.957627_g11809_i0 PRJEB41113 11818 155 1.957627 3.03432185 Candidatus Limnocylindria bacterium 3047546 Bacteria Bacteria 54.3 3.24e-7   NR HTD68799.1 3047546 g11809 i0 86.7 1.74193548387097 30 4 58.1 0 153 64 140 169 HTD68799.1 hypothetical protein [Candidatus Limnocylindria bacterium] diamond 270 54.3 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria       Candidatus Limnocylindria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;