RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJEB41113" and tax_clade = "Sar"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJEB41113 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6092997 6092997 PRJEB41113_S_NODE_5765_length_182_cov_4.896552_g5756_i0 PRJEB41113 5765 182 4.896552 8.91172464 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|915012534|ref|XM_013396269.1| 5801 g5756 i0 100 2.67032967032967 29 0 16 0 154 182 2866 2894 Eimeria acervulina hypothetical protein, conserved partial mRNA blastn 486 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
9918054 9918054 PRJEB41113_S_NODE_7508_length_171_cov_3.194030_g7499_i0 PRJEB41113 7508 171 3.19403 5.4617913 Xanthophyceae 2833 SAR_Eukaryotes SAR_Eukaryotes 315 1.65e-81   NTclustered gi|4106429|gb|AF083399.1|AF083399 55585 g7499 i0 100 100.590643274854 170 0 99 0 2 171 789 958 Heterococcus caespitosus 18S small subunit ribosomal RNA gene, partial sequence blastn 17201 315 1 Eukaryota Sar     Xanthophyceae Tribonematales Heteropediaceae Heterococcus Heterococcus caespitosus
23942192 23942192 PRJEB41113_S_NODE_7179_length_173_cov_3.272059_g7170_i0 PRJEB41113 7179 173 3.272059 5.66066207 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 206 1.05e-48   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g7170 i0 95.349 9.1271676300578 129 6 75 0 43 171 3082 2954 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 1579 206 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
29307091 29307091 PRJEB41113_S_NODE_2909_length_209_cov_2.430233_g2900_i0 PRJEB41113 2909 209 2.430233 5.07918697 Tribonema minus 303371 SAR_Eukaryotes SAR_Eukaryotes 130 1.14e-34   NR KAG5181505.1 303371 g2900 i0 85.5 1.98086124401914 69 10 99 0 3 209 257 325 KAG5181505.1 Coproporphyrinogen III oxidase [Tribonema minus] diamond 414 130 1 Eukaryota Sar     Xanthophyceae Tribonematales Tribonemataceae Tribonema Tribonema minus
31866534 31866534 PRJEB41113_S_NODE_3637_length_199_cov_2.135802_g3628_i0 PRJEB41113 3637 199 2.135802 4.25024598 Schizochytrium sp. TIO11 1907177 SAR_Eukaryotes SAR_Eukaryotes 107 2.25e-25   NR ANO44446.1 1868228 g3628 i0 67.2 4.82412060301507 64 21 96.5 0 3 194 431 494 ANO44446.1 cytochrome c oxidase subunit I [Schizochytrium sp. TIO1101] diamond 960 107 1 Eukaryota Sar     Bigyra Thraustochytrida Thraustochytriidae Schizochytrium Schizochytrium sp. TIO1101

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;