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contig_metadata

26 rows where bioproject = "PRJEB41113", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 26 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 26 ✖

bioproject 1

  • PRJEB41113 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5161385 5161385 PRJEB41113_S_NODE_12465_length_154_cov_0.940171_g12456_i0 PRJEB41113 12465 154 0.940171 1.44786334 Verrucomicrobiaceae 203557 Bacteria Bacteria 98.2 3.26e-22   NR WP_050028726.1 1396418 g12456 i0 93.9 8.59090909090909 49 3 95.5 0 148 2 18 66 WP_050028726.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit [Verrucomicrobium sp. BvORR034] diamond 1323 99 0.991919191919192 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. BvORR034
11537306 11537306 PRJEB41113_S_NODE_15470_length_150_cov_1.017699_g15461_i0 PRJEB41113 15470 150 1.017699 1.5265485 Horticoccus sp. 23ND18S-11 3391832 Bacteria Bacteria 78.6 2.39e-15   NR WP_414662907.1 3391832 g15461 i0 93 0.86 43 3 86 0 18 146 725 767 WP_414662907.1 DUF1553 domain-containing protein [Horticoccus sp. 23ND18S-11] diamond 129 78.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Horticoccus Horticoccus sp. 23ND18S-11
14087516 14087516 PRJEB41113_S_NODE_5692_length_183_cov_1.595890_g5683_i0 PRJEB41113 5692 183 1.59589 2.9204787 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 105 1.1399999999999999e-24   NR PYK80264.1 2026799 g5683 i0 96 2.45901639344262 50 2 82 0 150 1 1 50 PYK80264.1 MAG: MFS transporter [Verrucomicrobiota bacterium] diamond 450 105 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
17910697 17910697 PRJEB41113_S_NODE_4035_length_194_cov_13.363057_g4026_i0 PRJEB41113 4035 194 13.363057 25.92433058 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 337 4.13e-88   NTclustered gi|226525339|gb|FJ872375.1| 156588 g4026 i0 97.938 68.5257731958763 194 4 100 0 1 194 28649 28456 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 13294 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
25215954 25215954 PRJEB41113_S_NODE_260_length_353_cov_163826.895570_g251_i0 PRJEB41113 260 353 163826.89557 578308.9413621 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 129 9.52e-34   NR NLH73032.1 2026799 g251 i0 74.4 0.730878186968839 86 22 73.1 0 353 96 248 333 NLH73032.1 NAD(P)-dependent alcohol dehydrogenase [Verrucomicrobiota bacterium] diamond 258 129 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26615083 26615083 PRJEB41113_S_NODE_3021_length_207_cov_4.500000_g3012_i0 PRJEB41113 3021 207 4.5 9.315 Verrucomicrobiota 74201 Bacteria Bacteria 120 1.01e-31   NR WP_009962404.1 2736 g3012 i0 87.7 6.59420289855072 65 8 94.2 0 196 2 52 116 WP_009962404.1 hypothetical protein [Verrucomicrobium spinosum] diamond 1365 120 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum
26780372 26780372 PRJEB41113_S_NODE_10961_length_157_cov_3.058333_g10952_i0 PRJEB41113 10961 157 3.058333 4.80158281 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 50.4 2.1e-6   NR MCZ7636652.1 2026799 g10952 i0 85.7 0.535031847133758 28 4 53.5 0 86 3 42 69 MCZ7636652.1 UPF0175 family protein [Verrucomicrobiota bacterium] diamond 84 50.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26906920 26906920 PRJEB41113_S_NODE_1102_length_257_cov_5.472727_g1093_i0 PRJEB41113 1102 257 5.472727 14.06490839 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 183 1.45e-56   NR PYK75288.1 2026799 g1093 i0 96.5 2.97665369649805 85 3 99.2 0 257 3 39 123 PYK75288.1 MAG: hypothetical protein DME42_02880 [Verrucomicrobiota bacterium] diamond 765 183 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27191371 27191371 PRJEB41113_S_NODE_15262_length_150_cov_3.327434_g15253_i0 PRJEB41113 15262 150 3.327434 4.991151 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 68.2 1.02e-11   NR HEX4639883.1 2201154 g15253 i0 97.1 0.7 35 1 70 0 30 134 355 389 HEX4639883.1 cysteine desulfurase NifS [Chthoniobacterales bacterium] diamond 105 68.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
27286303 27286303 PRJEB41113_S_NODE_4723_length_189_cov_4.506579_g4714_i0 PRJEB41113 4723 189 4.506579 8.51743431 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 88.6 5.5e-19   NR MCU0749161.1 2562705 g4714 i0 79.6 0.857142857142857 54 11 85.7 0 11 172 297 350 MCU0749161.1 HAD hydrolase-like protein [Akkermansiaceae bacterium] diamond 162 88.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
27981106 27981106 PRJEB41113_S_NODE_12365_length_154_cov_1.871795_g12356_i0 PRJEB41113 12365 154 1.871795 2.8825643 Opitutaceae bacterium 2006848 Bacteria Bacteria 79.3 1.34e-15   NR MBL9209078.1 2006848 g12356 i0 90.7 1.67532467532468 43 4 83.8 0 24 152 1 43 MBL9209078.1 alpha-glucan family phosphorylase [Opitutaceae bacterium] diamond 258 79.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
28069081 28069081 PRJEB41113_S_NODE_9565_length_161_cov_3.959677_g9556_i0 PRJEB41113 9565 161 3.959677 6.37507997 Bacteria 2 Bacteria Bacteria 79.3 1.53e-15   NR PYK75258.1 2026799 g9556 i0 64.8 1.97515527950311 54 17 96.9 1 159 4 649 702 PYK75258.1 MAG: hypothetical protein DME42_03025, partial [Verrucomicrobiota bacterium] diamond 318 79.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28170489 28170489 PRJEB41113_S_NODE_806_length_274_cov_4.767932_g797_i0 PRJEB41113 806 274 4.767932 13.06413368 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 51.2 5.43e-5   NR QTN31265.1 2562705 g797 i0 29.8 1.02919708029197 94 52 97.4 2 1 267 112 196 QTN31265.1 hypothetical protein HZ994_02600 [Akkermansiaceae bacterium] diamond 282 51.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
28549578 28549578 PRJEB41113_S_NODE_7527_length_171_cov_2.686567_g7518_i0 PRJEB41113 7527 171 2.686567 4.59402957 Opitutaceae bacterium 2006848 Bacteria Bacteria 77.8 6.06e-15   NR HVU35120.1 2006848 g7518 i0 62.5 1.96491228070175 56 21 98.2 0 2 169 178 233 HVU35120.1 hypothetical protein [Opitutaceae bacterium] diamond 336 77.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
28865077 28865077 PRJEB41113_S_NODE_9388_length_162_cov_2.248000_g9379_i0 PRJEB41113 9388 162 2.248 3.64176 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 76.3 4.87e-15   NR PYK80681.1 2026799 g9379 i0 92.5 0.740740740740741 40 3 74.1 0 162 43 191 230 PYK80681.1 MAG: YggS family pyridoxal phosphate-dependent enzyme [Verrucomicrobiota bacterium] diamond 120 76.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29528260 29528260 PRJEB41113_S_NODE_610_length_292_cov_4.050980_g601_i0 PRJEB41113 610 292 4.05098 11.8288616 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 73.9 7.849999999999999e-14   NR PYL00618.1 2026799 g601 i0 68.8 1.47945205479452 48 15 49.3 0 18 161 115 162 PYL00618.1 MAG: hypothetical protein DME32_10570 [Verrucomicrobiota bacterium] diamond 432 73.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29654086 29654086 PRJEB41113_S_NODE_10950_length_157_cov_3.391667_g10941_i0 PRJEB41113 10950 157 3.391667 5.32491719 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 99 1.84e-22   NR PYL00384.1 2026799 g10941 i0 90.4 1.98726114649682 52 5 99.4 0 1 156 760 811 PYL00384.1 MAG: aconitate hydratase [Verrucomicrobiota bacterium] diamond 312 99 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29654090 29654090 PRJEB41113_S_NODE_5190_length_186_cov_2.503356_g5181_i0 PRJEB41113 5190 186 2.503356 4.65624216 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 122 5.91e-34   NR PYL02402.1 2026799 g5181 i0 96.4 1.80645161290323 56 2 90.3 0 186 19 86 141 PYL02402.1 MAG: hypothetical protein DME32_06540, partial [Verrucomicrobiota bacterium] diamond 336 122 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29843916 29843916 PRJEB41113_S_NODE_11411_length_156_cov_1.521008_g11402_i0 PRJEB41113 11411 156 1.521008 2.37277248 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 80.5 5.5e-16   NR PYK98345.1 2026799 g11402 i0 72.5 0.980769230769231 51 14 98.1 0 155 3 541 591 PYK98345.1 MAG: hypothetical protein DME32_14405 [Verrucomicrobiota bacterium] diamond 153 80.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30222960 30222960 PRJEB41113_S_NODE_6872_length_175_cov_2.869565_g6863_i0 PRJEB41113 6872 175 2.869565 5.02173875 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 48.9 9.09e-5   NR PYJ39391.1 2026799 g6863 i0 50.9 3.89142857142857 57 22 90.9 2 16 174 33 87 PYJ39391.1 MAG: HNH endonuclease [Verrucomicrobiota bacterium] diamond 681 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30563606 30563606 PRJEB41113_S_NODE_6273_length_179_cov_2.154930_g6264_i0 PRJEB41113 6273 179 2.15493 3.8573247 Bacteria 2 Bacteria Bacteria 82 1.79e-18   NR PYK80061.1 2026799 g6264 i0 100 2.74860335195531 41 0 68.7 0 2 124 67 107 PYK80061.1 MAG: thioredoxin [Verrucomicrobiota bacterium] diamond 492 82 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30658705 30658705 PRJEB41113_S_NODE_12373_length_154_cov_1.777778_g12364_i0 PRJEB41113 12373 154 1.777778 2.73777812 Bacteria 2 Bacteria Bacteria 106 1.03e-26   NR PYI78415.1 2026799 g12364 i0 90 2.9025974025974 50 5 97.4 0 3 152 24 73 PYI78415.1 MAG: hypothetical protein DMF04_03410, partial [Verrucomicrobiota bacterium] diamond 447 106 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31645148 31645148 PRJEB41113_S_NODE_6717_length_176_cov_2.309353_g6708_i0 PRJEB41113 6717 176 2.309353 4.06446128 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 63.9 2.98e-10   NR MDB6035164.1 2026801 g6708 i0 49.1 1.96022727272727 57 29 97.2 0 174 4 95 151 MDB6035164.1 transposase family protein [Verrucomicrobiales bacterium] diamond 345 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
32310000 32310000 PRJEB41113_S_NODE_1819_length_231_cov_2.804124_g1810_i0 PRJEB41113 1819 231 2.804124 6.47752644 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 72 1.49e-12   NR KAB2645041.1 2026799 g1810 i0 44.7 0.987012987012987 76 42 98.7 0 3 230 142 217 KAB2645041.1 MAG: lipopolysaccharide biosynthesis protein [Verrucomicrobiota bacterium] diamond 228 72 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32468145 32468145 PRJEB41113_S_NODE_10499_length_158_cov_13.611570_g10490_i0 PRJEB41113 10499 158 13.61157 21.5062806 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 59.7 1.2e-8   NR HET7227175.1 2201154 g10490 i0 80.5 0.778481012658228 41 8 77.8 0 2 124 415 455 HET7227175.1 cytochrome bc complex cytochrome b subunit [Chthoniobacterales bacterium] diamond 123 59.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
32688641 32688641 PRJEB41113_S_NODE_720_length_281_cov_2.893443_g711_i0 PRJEB41113 720 281 2.893443 8.13057483 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 103 1.08e-25   NR MEY4485109.1 2026799 g711 i0 88.1 0.629893238434164 59 6 61.9 1 2 175 94 152 MEY4485109.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 177 103 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;