RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB41113", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJEB41113 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9918042 9918042 PRJEB41113_S_NODE_2468_length_216_cov_11.072626_g2459_i0 PRJEB41113 2468 216 11.072626 23.91687216 Funneliformis 1117308 Fungi Fungi 185 1.8e-42   NTclustered gi|1134775594|gb|KX184417.1| 27381 g2459 i0 100 45.8472222222222 100 0 46 0 117 216 545 446 Funneliformis mosseae strain TPV 18S ribosomal RNA gene, partial sequence blastn 9903 185 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Funneliformis Funneliformis mosseae
19184683 19184683 PRJEB41113_S_NODE_8496_length_166_cov_2.000000_g8487_i0 PRJEB41113 8496 166 2 3.32 Gilbertella persicaria 101096 Fungi Fungi 156 1.03e-33   NTclustered gi|2323733317|ref|XM_051575565.1| 101096 g8487 i0 84.967 13.5 153 23 92 0 8 160 813 965 Gilbertella persicaria isocitrate dehydrogenase, NAD-dependent (B0P05DRAFT_508186), mRNA blastn 2241 156 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Choanephoraceae Gilbertella Gilbertella persicaria
28612566 28612566 PRJEB41113_S_NODE_2327_length_219_cov_7.335165_g2318_i0 PRJEB41113 2327 219 7.335165 16.06401135 Mycotypha africana 64632 Fungi Fungi 45.8 0.00217   NR XP_052933551.1 64632 g2318 i0 64.5 0.424657534246575 31 11 42.5 0 26 118 423 453 XP_052933551.1 Mur ligase [Mycotypha africana] diamond 93 45.8 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mycotyphaceae Mycotypha Mycotypha africana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;