RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB39643", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB39643 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2608130 2608130 PRJEB39643_P_NODE_60363_length_281_cov_1.480769_g60170_i0 PRJEB39643 60363 281 1.480769 4.16096089 Nitrosarchaeum sp. 2026886 Archaea Archaea 74.7 3.41e-13   NR HSA76263.1 2026886 g60170 i0 50.6 0.864768683274021 81 36 86.5 3 245 3 617 693 HSA76263.1 SAM-dependent methyltransferase [Nitrosarchaeum sp.] diamond 243 74.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp.
28264935 28264935 PRJEB39643_P_NODE_10386_length_607_cov_1.556180_g10204_i0 PRJEB39643 10386 607 1.55618 9.4460126 Nitrosopumilus sp. b2 2109908 Archaea Archaea 48.9 0.00125   NR WP_182126514.1 2109908 g10204 i0 44.7 0.686985172981878 47 26 23.2 0 173 313 36 82 WP_182126514.1 tetratricopeptide repeat protein [Nitrosopumilus sp. b2] diamond 417 48.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp. b2
31044843 31044843 PRJEB39643_P_NODE_77955_length_272_cov_1.547739_g77762_i0 PRJEB39643 77955 272 1.547739 4.20985008 Nitrososphaera sp. 1971748 Archaea Archaea 75.5 4.99e-14   NR NOJ26676.1 1971748 g77762 i0 46.3 0.904411764705882 82 42 90.4 1 26 271 2 81 NOJ26676.1 alcohol dehydrogenase [Nitrososphaera sp.] diamond 246 75.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;