RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB39643", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJEB39643 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29212582 29212582 PRJEB39643_P_NODE_51429_length_285_cov_1.452830_g51236_i0 PRJEB39643 51429 285 1.45283 4.1405655 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 187 7.51e-53   NR WP_299076996.1 1678694 g51236 i0 100 0.989473684210526 94 0 98.9 0 283 2 1300 1393 WP_299076996.1 DNA-directed RNA polymerase subunit beta' [uncultured Fretibacterium sp.] diamond 282 187 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
32594423 32594423 PRJEB39643_P_NODE_83900_length_269_cov_1.571429_g83707_i0 PRJEB39643 83900 269 1.571429 4.22714401 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 167 1.5499999999999998e-48   NR WP_299301566.1 1678694 g83707 i0 89.9 0.992565055762082 89 9 99.3 0 269 3 81 169 WP_299301566.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [uncultured Fretibacterium sp.] diamond 267 167 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;