RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB39643", tax_kingdom = "Thermotogati" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJEB39643 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29401849 29401849 PRJEB39643_P_NODE_95449_length_263_cov_1.621053_g95256_i0 PRJEB39643 95449 263 1.621053 4.26336939 Trueperaceae bacterium 2026798 Bacteria Bacteria 41.6 0.0223   NR MFO8149310.1 2026798 g95256 i0 32.8 0.695817490494297 61 41 69.6 0 184 2 14 74 MFO8149310.1 hypothetical protein [Trueperaceae bacterium] diamond 183 41.6 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
29995342 29995342 PRJEB39643_P_NODE_41831_length_291_cov_2.201835_g41638_i0 PRJEB39643 41831 291 2.201835 6.40733985 Bacteria 2 Bacteria Bacteria 162 7.57e-45   NR WP_277188353.1 277 g41638 i0 80.4 42.6494845360825 97 15 99 2 3 290 157 250 WP_277188353.1 phosphoenolpyruvate carboxykinase (GTP), partial [Meiothermus ruber] diamond 12411 162 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus ruber
30026915 30026915 PRJEB39643_P_NODE_25131_length_364_cov_4.683849_g24938_i0 PRJEB39643 25131 364 4.683849 17.04921036 root 1 Root_unresolved Root_unresolved 128 1.6999999999999996e-31   NR 1TAQ_A 271 g24938 i0 95.6 2.24175824175824 68 3 56 0 161 364 490 557 1TAQ_A Chain A, TAQ DNA POLYMERASE [Thermus aquaticus] diamond 816 128 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;