RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB39643" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 6 ✖

bioproject 1

  • PRJEB39643 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5159779 5159779 PRJEB39643_P_NODE_13625_length_510_cov_607.228833_g13434_i0 PRJEB39643 13625 510 607.228833 3096.8670483 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 126 2.9e-24   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g13434 i0 100 3.25490196078431 68 0 33 0 1 68 4 71 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 1660 126 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
8642646 8642646 PRJEB39643_P_NODE_35827_length_311_cov_35.714286_g35634_i0 PRJEB39643 35827 311 35.714286 111.07142946 root 1 Root_unresolved Root_unresolved 158 5.9899999999999985e-34   NTclustered gi|1366793707|gb|MH085239.1| 11320 g35634 i0 100 36.8231511254019 85 0 38 0 1 85 1448 1364 Influenza A virus (A/Puerto Rico/8/1934(H1N1)) clone OP7-4 segment 5 nucleocapsid protein (NP) gene, complete cds blastn 11452 158 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
10260591 10260591 PRJEB39643_P_NODE_17809_length_433_cov_494.475000_g17616_i0 PRJEB39643 17809 433 494.475 2141.07675 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 126 2.4299999999999994e-24   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g17616 i0 100 3.22170900692841 68 0 30 0 210 277 71 4 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 1395 126 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
12811541 12811541 PRJEB39643_P_NODE_40371_length_296_cov_1.381166_g40178_i0 PRJEB39643 40371 296 1.381166 4.08825136 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 52.8 0.027   NTclustered gi|2756424380|gb|PP745982.1| 3003959 g40178 i0 100 0.0945945945945946 28 0 9 0 146 173 1087 1060 MAG: Picornavirales sp. isolate 319_50993 genomic sequence blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
18840994 18840994 PRJEB39643_P_NODE_112475_length_255_cov_2.115385_g112282_i0 PRJEB39643 112475 255 2.115385 5.39423175 root 1 Root_unresolved Root_unresolved 67.6 8.27e-7   NTclustered gi|297841|emb|X17218.1| 12730 g112282 i0 100 11.9764705882353 36 0 14 0 1 36 1614 1649 Sendai virus strain Fushimi genomic RNA for nucleocapsid protein (NP) blastn 3054 67.6 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
24283557 24283557 PRJEB39643_P_NODE_17580_length_436_cov_496.796143_g17387_i0 PRJEB39643 17580 436 496.796143 2166.03118348 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 126 2.45e-24   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g17387 i0 100 3.17889908256881 68 0 30 0 213 280 71 4 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 1386 126 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;