RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB39643", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJEB39643 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22666363 22666363 PRJEB39643_P_NODE_35338_length_313_cov_3.425000_g35145_i0 PRJEB39643 35338 313 3.425 10.72025 root 1 Root_unresolved Root_unresolved 270 7.42e-68   NTclustered gi|166407054|gb|EU104798.1| 34034 g35145 i0 98.693 76.7348242811502 153 1 96 1 2 153 488 640 Uncultured delta proteobacterium clone 2R1U50 16S ribosomal RNA gene, partial sequence blastn 24018 270 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
29622367 29622367 PRJEB39643_P_NODE_152070_length_237_cov_2.926829_g151877_i0 PRJEB39643 152070 237 2.926829 6.93658473 Deltaproteobacteria bacterium RIFOXYA12_FULL_61_11 1797896 Bacteria Bacteria 42 0.0205   NR OGR01170.1 1797896 g151877 i0 38.9 0.683544303797468 54 30 64.6 1 23 175 2 55 OGR01170.1 MAG: hypothetical protein A2284_08160 [Deltaproteobacteria bacterium RIFOXYA12_FULL_61_11] diamond 162 42 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_61_11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;