RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB39643", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB39643 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12811962 12811962 PRJEB39643_P_NODE_8411_length_694_cov_11.307568_g8236_i0 PRJEB39643 8411 694 11.307568 78.47452192 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 66.6 6.03e-9   NR XP_002778973.1 423536 g8236 i0 39.3 0.462536023054755 107 60 44.1 3 31 336 12 118 XP_002778973.1 46 kDa FK506-binding nuclear protein, putative [Perkinsus marinus ATCC 50983] diamond 321 66.6 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
26780277 26780277 PRJEB39643_P_NODE_112181_length_255_cov_4.296703_g111988_i0 PRJEB39643 112181 255 4.296703 10.95659265 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 52.4 1.68e-5   NR KAF4657269.1 330153 g111988 i0 38.7 1.03529411764706 62 37 72.9 1 26 211 439 499 KAF4657269.1 hypothetical protein FOL47_008531 [Perkinsus chesapeaki] diamond 264 52.4 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
30532234 30532234 PRJEB39643_P_NODE_121693_length_251_cov_1.730337_g121500_i0 PRJEB39643 121693 251 1.730337 4.34314587 Dinophyceae 2864 SAR_Eukaryotes SAR_Eukaryotes 55.8 7.49e-7   NR KAF4735487.1 32597 g121500 i0 48.2 5.31872509960159 56 27 66.9 1 249 82 42 95 KAF4735487.1 Small subunit processome component [Perkinsus olseni] diamond 1335 55.8 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
32745189 32745189 PRJEB39643_P_NODE_152240_length_237_cov_2.146341_g152047_i0 PRJEB39643 152240 237 2.146341 5.08682817 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 111 1.1e-27   NR KAF4684998.1 32597 g152047 i0 70.5 11.8481012658228 78 21 98.7 1 2 235 47 122 KAF4684998.1 Protein phosphatase PP2A regulatory subunit B, partial [Perkinsus olseni] diamond 2808 112 0.991071428571429 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;