RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB39643", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB39643 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8985200 8985200 PRJEB39643_P_NODE_45708_length_288_cov_2.809302_g45515_i0 PRJEB39643 45708 288 2.809302 8.09078976 Lentisphaeria bacterium 2053569 Bacteria Bacteria 152 1.01e-44   NR MBR2426998.1 2053569 g45515 i0 71.6 12.78125 95 27 99 0 2 286 7 101 MBR2426998.1 GTP cyclohydrolase I FolE [Lentisphaeria bacterium] diamond 3681 152 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
21391514 21391514 PRJEB39643_P_NODE_19777_length_410_cov_1.952522_g19584_i0 PRJEB39643 19777 410 1.952522 8.0053402 Bacteria 2 Bacteria Bacteria 54.7 0.011   NTclustered gi|2126063867|gb|CP085689.1| 2886196 g19584 i0 100 0.141463414634146 29 0 7 0 179 207 2862583 2862555 Lentisphaerae bacterium WC36 chromosome, complete genome blastn 58 54.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium WC36
27254545 27254545 PRJEB39643_P_NODE_27623_length_349_cov_2.231884_g27430_i0 PRJEB39643 27623 349 2.231884 7.78927516 Lentisphaeria bacterium 2053569 Bacteria Bacteria 125 1.16e-31   NR MBQ7404461.1 2053569 g27430 i0 68.8 11.0458452722063 93 28 79.1 1 291 16 2 94 MBQ7404461.1 molecular chaperone DnaJ [Lentisphaeria bacterium] diamond 3855 125 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
32303311 32303311 PRJEB39643_P_NODE_41839_length_291_cov_2.146789_g41646_i0 PRJEB39643 41839 291 2.146789 6.24715599 Bacteria 2 Bacteria Bacteria 47.8 9.98e-4   NR MBE6374071.1 1932692 g41646 i0 38 1.27835051546392 71 37 73.2 2 271 59 1 64 MBE6374071.1 hypothetical protein [Lentisphaerota bacterium] diamond 372 48.1 0.993762993762994 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;