RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB39643", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB39643 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30191290 30191290 PRJEB39643_P_NODE_6672_length_801_cov_4.670330_g6518_i0 PRJEB39643 6672 801 4.67033 37.4093433 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 52.4 0.0012   NR MDD5439301.1 2035772 g6518 i0 51.2 0.325842696629214 43 21 16.1 0 531 659 184 226 MDD5439301.1 ATP-binding protein [Candidatus Omnitrophota bacterium] diamond 261 52.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31012824 31012824 PRJEB39643_P_NODE_148475_length_241_cov_2.178571_g148282_i0 PRJEB39643 148475 241 2.178571 5.25035611 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 58.5 6.32e-9   NR MDD2702505.1 2035772 g148282 i0 49.2 1.21991701244813 59 30 73.4 0 227 51 13 71 MDD2702505.1 NINE protein [Candidatus Omnitrophota bacterium] diamond 294 58.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32625679 32625679 PRJEB39643_P_NODE_98300_length_262_cov_1.629630_g98107_i0 PRJEB39643 98300 262 1.62963 4.2696306 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 60.8 2.06e-8   NR MCA9395391.1 2035772 g98107 i0 52.3 1.44274809160305 65 30 73.3 1 5 196 1048 1112 MCA9395391.1 S8 family serine peptidase [Candidatus Omnitrophota bacterium] diamond 378 60.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;