RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB39643", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB39643 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5160694 5160694 PRJEB39643_P_NODE_77125_length_272_cov_1.547739_g76932_i0 PRJEB39643 77125 272 1.547739 4.20985008 Bacteria 2 Bacteria Bacteria 156 1.0399999999999997e-42   NR MBK6505355.1 2053306 g76932 i0 75.6 27.7830882352941 90 22 99.3 0 271 2 382 471 MBK6505355.1 phosphoenolpyruvate carboxykinase (GTP) [Ignavibacteria bacterium] diamond 7557 157 0.993630573248408 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
32278198 32278198 PRJEB39643_P_NODE_28239_length_346_cov_0.846154_g28046_i0 PRJEB39643 28239 346 0.846154 2.92769284 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 49.7 3.38e-4   NR MBN1300029.1 2614255 g28046 i0 37.7 1.02312138728324 69 38 55.5 1 221 30 193 261 MBN1300029.1 tetratricopeptide repeat protein [Melioribacteraceae bacterium] diamond 354 49.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;