RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJEB39269", tax_phylum = "Rhodophyta" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_phylum 1

  • Rhodophyta · 6 ✖

bioproject 1

  • PRJEB39269 · 6 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3883195 3883195 PRJEB39269_P_NODE_63504_length_173_cov_3.402985_g63099_i0 PRJEB39269 63504 173 3.402985 5.88716405 Gracilaria multipartita 172945 Rhodophyta other_Eukaryota 137 3.8999999999999995e-28   NTclustered gi|2127868706|ref|NC_058681.1| 172945 g63099 i0 83.784 17.2254335260116 148 20 84 4 27 172 10077 10222 Gracilaria multipartita voucher #FG131 mitochondrion, complete genome blastn 2980 137 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilaria Gracilaria multipartita
11535228 11535228 PRJEB39269_P_NODE_18090_length_330_cov_1.859107_g17685_i0 PRJEB39269 18090 330 1.859107 6.1350531 Ahnfeltiopsis linearis 38472 Rhodophyta other_Eukaryota 220 8.05e-53   NTclustered gi|1044641033|gb|KU640290.1| 38472 g17685 i0 79.012 82.9151515151515 324 67 98 1 1 324 653 975 Ahnfeltiopsis linearis isolate CNU034160 cytochrome c oxidase subunit I (cox1) gene, partial cds; mitochondrial blastn 27362 220 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Phyllophoraceae Ahnfeltiopsis Ahnfeltiopsis linearis
11535229 11535229 PRJEB39269_P_NODE_19950_length_314_cov_3.101818_g19545_i0 PRJEB39269 19950 314 3.101818 9.73970852 Vertebrata lanosa 1261582 Rhodophyta other_Eukaryota 174 6.01e-39   NTclustered gi|1109378595|ref|NC_032003.1| 1261582 g19545 i0 86.335 42.156050955414 161 20 51 2 30 189 6294 6453 Vertebrata lanosa mitochondrion, complete genome blastn 13237 174 1 Eukaryota     Rhodophyta Florideophyceae Ceramiales Rhodomelaceae Vertebrata Vertebrata lanosa
14085381 14085381 PRJEB39269_P_NODE_69092_length_169_cov_1.261538_g68687_i0 PRJEB39269 69092 169 1.261538 2.13199922 Thorea hispida 202687 Rhodophyta other_Eukaryota 171 3.73e-38   NTclustered gi|1211678005|ref|NC_035158.1| 202687 g68687 i0 86.076 84.7810650887574 158 22 93 0 5 162 8474 8631 Thorea hispida mitochondrion, complete genome blastn 14328 171 1 Eukaryota     Rhodophyta Florideophyceae Thoreales Thoreaceae Thorea Thorea hispida
19182563 19182563 PRJEB39269_P_NODE_66596_length_170_cov_3.328244_g66191_i0 PRJEB39269 66596 170 3.328244 5.6580148 Hypnea pannosa 105607 Rhodophyta other_Eukaryota 67.6 5.08e-7   NTclustered gi|1631823298|gb|MK814680.1| 105607 g66191 i0 86.885 1.06470588235294 61 7 36 1 96 156 151234 151175 Hypnea pannosa isolate HV05551 plastid blastn 181 67.6 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Hypneaceae Hypnea Hypnea pannosa
29332052 29332052 PRJEB39269_P_NODE_67329_length_170_cov_2.610687_g66924_i0 PRJEB39269 67329 170 2.610687 4.4381679 Rhodophyta 2763 Rhodophyta other_Eukaryota 50.4 2.61e-5   NR GJQ10026.1 83374 g66924 i0 88.5 1.37647058823529 26 3 45.9 0 93 170 91 116 GJQ10026.1 hypothetical protein GpartN1_g1817.t1 [Galdieria partita] diamond 234 50.8 0.992125984251969 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria partita

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;