RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB39269" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJEB39269 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27728724 27728724 PRJEB39269_P_NODE_57884_length_181_cov_1.697183_g57479_i0 PRJEB39269 57884 181 1.697183 3.07190123 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 93.2 5.9400000000000005e-21   NR HET7058514.1 2026770 g57479 i0 81.5 0.895027624309392 54 10 89.5 0 19 180 63 116 HET7058514.1 hypothetical protein [Nitrospiraceae bacterium] diamond 162 93.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
29149570 29149570 PRJEB39269_P_NODE_36009_length_230_cov_1.282723_g35604_i0 PRJEB39269 36009 230 1.282723 2.9502629 Nitrospirota bacterium 2026887 Bacteria Bacteria 53.1 1.22e-6   NR MBI5740673.1 2026887 g35604 i0 47.1 1.25217391304348 51 27 66.5 0 223 71 21 71 MBI5740673.1 hypothetical protein [Nitrospirota bacterium] diamond 288 53.1 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
29237448 29237448 PRJEB39269_P_NODE_37089_length_226_cov_1.973262_g36684_i0 PRJEB39269 37089 226 1.973262 4.45957212 Nitrospira 1234 Bacteria Bacteria 62 4.95e-9   NR MBP7363023.1 70125 g36684 i0 50 10.8451327433628 76 31 99.6 2 2 226 1088 1157 MBP7363023.1 amino acid adenylation domain-containing protein [Nitrospira sp.] diamond 2451 62 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
29433042 29433042 PRJEB39269_P_NODE_83430_length_156_cov_1.410256_g83025_i0 PRJEB39269 83430 156 1.410256 2.19999936 Nitrospira sp. ST-bin4 1978764 Bacteria Bacteria 52 4.97e-7   NR OQW57907.1 1978764 g83025 i0 57.4 0.903846153846154 47 18 90.4 1 6 146 39 83 OQW57907.1 MAG: hypothetical protein BVN28_12185 [Nitrospira sp. ST-bin4] diamond 141 52 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. ST-bin4
31076119 31076119 PRJEB39269_P_NODE_83135_length_156_cov_2.700855_g82730_i0 PRJEB39269 83135 156 2.700855 4.2133338 Nitrospirota bacterium 2026887 Bacteria Bacteria 55.8 2.22e-7   NR MBI5854146.1 2026887 g82730 i0 47.1 1.30769230769231 68 20 100 3 156 1 130 197 MBI5854146.1 SUF system NifU family Fe-S cluster assembly protein [Nitrospirota bacterium] diamond 204 55.8 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
31803196 31803196 PRJEB39269_P_NODE_62077_length_175_cov_2.161765_g61672_i0 PRJEB39269 62077 175 2.161765 3.78308875 Nitrospirota bacterium 2026887 Bacteria Bacteria 104 3.0599999999999998e-24   NR HXY54540.1 2026887 g61672 i0 84.5 4.97142857142857 58 9 99.4 0 174 1 211 268 HXY54540.1 efflux RND transporter permease subunit [Nitrospirota bacterium] diamond 870 104 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
32688545 32688545 PRJEB39269_P_NODE_62060_length_175_cov_2.367647_g61655_i0 PRJEB39269 62060 175 2.367647 4.14338225 Nitrospira sp. 70125 Bacteria Bacteria 75.5 4.34e-14   NR MBS0156140.1 70125 g61655 i0 64.3 0.96 56 20 96 0 1 168 1091 1146 MBS0156140.1 hypothetical protein [Nitrospira sp.] diamond 168 75.5 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;