RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB39269", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB39269 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
57088 57088 PRJEB39269_P_NODE_42921_length_209_cov_4.141176_g42516_i0 PRJEB39269 42921 209 4.141176 8.65505784 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 130 8.230000000000001e-26   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g42516 i0 78.972 26.0191387559809 214 27 100 16 1 209 4029 3829 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 5438 130 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
8984176 8984176 PRJEB39269_P_NODE_77408_length_160_cov_3.000000_g77003_i0 PRJEB39269 77408 160 3 4.8 Cholamonas cyrtodiopsidis 507873 SAR_Eukaryotes SAR_Eukaryotes 115 1.67e-21   NTclustered gi|238617668|gb|FJ973413.1| 507873 g77003 i0 97.059 40.55 68 2 43 0 2 69 962 895 Cholamonas cyrtodiopsidis strain ATCC 50325 alpha-tubulin (atub) gene, partial cds blastn 6488 115 1 Eukaryota Sar   Cercozoa     Sainouridae Cholamonas Cholamonas cyrtodiopsidis
9917414 9917414 PRJEB39269_P_NODE_32768_length_241_cov_3.539604_g32363_i0 PRJEB39269 32768 241 3.539604 8.53044564 Cercomonadida 188941 SAR_Eukaryotes SAR_Eukaryotes 278 3.29e-70   NTclustered gi|238617605|gb|FJ973380.1| 45107 g32363 i0 88.136 77.7759336099585 236 25 98 3 1 235 1255 1488 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 18744 278 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
20115784 20115784 PRJEB39269_P_NODE_73016_length_165_cov_1.214286_g72611_i0 PRJEB39269 73016 165 1.214286 2.0035719 Cercomonadidae 45108 SAR_Eukaryotes SAR_Eukaryotes 300 4.46e-77   NTclustered gi|1002343602|gb|KU738480.1| 175275 g72611 i0 99.394 97.430303030303 165 1 100 0 1 165 40 204 Uncultured Cercozoa clone OTU_318 18S ribosomal RNA gene, partial sequence blastn 16076 300 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;