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contig_metadata

19 rows where bioproject = "PRJEB39269", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 19 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 19 ✖

bioproject 1

  • PRJEB39269 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1331343 1331343 PRJEB39269_P_NODE_40662_length_215_cov_2.522727_g40257_i0 PRJEB39269 40662 215 2.522727 5.42386305 Latimeria chalumnae 7897 Chordata Chordata 60.2 1.13e-4   NTclustered gi|2721754178|ref|XM_064552669.1| 7897 g40257 i0 97.222 0.637209302325581 36 0 16 1 129 163 11866 11901 PREDICTED: Latimeria chalumnae periaxin (PRX), mRNA blastn 137 60.2 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
3883213 3883213 PRJEB39269_P_NODE_78524_length_159_cov_4.666667_g78119_i0 PRJEB39269 78524 159 4.666667 7.42000053 Sus scrofa 9823 Chordata Chordata 150 4.54e-32   NTclustered gi|220682617|gb|EU853705.1| 9823 g78119 i0 100 265.503144654088 81 0 100 0 1 81 107549 107629 Sus scrofa acetyl-coenzyme A carboxylase beta (ACACB) gene, complete cds, alternatively spliced blastn 42215 150 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
3883231 3883231 PRJEB39269_P_NODE_84104_length_155_cov_16.646552_g83699_i0 PRJEB39269 84104 155 16.646552 25.8021556 Jaculus jaculus 51337 Chordata Chordata 76.8 7.56e-10   NTclustered gi|2147875786|ref|XR_006634867.1| 51337 g83699 i0 80.556 9.65806451612903 108 13 66 8 2 104 15 119 PREDICTED: Jaculus jaculus U2 spliceosomal RNA (LOC123457024), ncRNA blastn 1497 76.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Dipodidae Jaculus Jaculus jaculus
6435321 6435321 PRJEB39269_P_NODE_89246_length_151_cov_3.562500_g88841_i0 PRJEB39269 89246 151 3.5625 5.379375 Canis lupus 9612 Chordata Chordata 106 9.33e-19   NTclustered gi|167860228|gb|AC190116.3| 9615 g88841 i0 87.234 5.32450331125828 94 11 87 1 43 135 188275 188182 Canis familiaris chromosome 31, clone XX-443F3, complete sequence blastn 804 106 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
14085341 14085341 PRJEB39269_P_NODE_36492_length_228_cov_1.947090_g36087_i0 PRJEB39269 36492 228 1.94709 4.4393652 Eretmochelys imbricata 27787 Chordata Chordata 52.8 0.02   NTclustered gi|2913380327|emb|OZ223903.1| 27787 g36087 i0 100 0.12280701754386 28 0 12 0 114 141 3387378 3387351 Eretmochelys imbricata isolate rEreImb1 genome assembly, chromosome: 22 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Eretmochelys Eretmochelys imbricata
14085364 14085364 PRJEB39269_P_NODE_63332_length_174_cov_0.962963_g62927_i0 PRJEB39269 63332 174 0.962963 1.67555562 Scyliorhinus canicula 7830 Chordata Chordata 86.1 1.44e-12   NTclustered gi|1952459419|ref|XM_038779474.1| 7830 g62927 i0 87.838 1.79310344827586 74 8 42 1 35 107 809 882 PREDICTED: Scyliorhinus canicula sorting nexin-11-like (LOC119954333), transcript variant X2, mRNA blastn 312 86.1 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
19182541 19182541 PRJEB39269_P_NODE_43996_length_207_cov_1.220238_g43591_i0 PRJEB39269 43996 207 1.220238 2.52589266 Mus musculus 10090 Chordata Chordata 374 3.4e-99   NTclustered gi|2548330513|gb|OQ915115.1| 10090 g43591 i0 99.512 41.1932367149758 205 1 99 0 3 207 3264 3468 Mus musculus clone BAC JH_40 45S ribosomal RNA and 18S ribosomal RNA genes, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, 3' and 5' external transcribed spacers, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 8527 374 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
19182586 19182586 PRJEB39269_P_NODE_83156_length_156_cov_2.452991_g82751_i0 PRJEB39269 83156 156 2.452991 3.82666596 Erpetoichthys calabaricus 27687 Chordata Chordata 52.8 0.013   NTclustered gi|2327560703|ref|XM_051934506.1| 27687 g82751 i0 100 3.07692307692308 28 0 18 0 1 28 10287 10260 PREDICTED: Erpetoichthys calabaricus ectodysplasin A2 receptor (eda2r), mRNA blastn 480 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
23009156 23009156 PRJEB39269_P_NODE_87839_length_152_cov_4.575221_g87434_i0 PRJEB39269 87839 152 4.575221 6.95433592 Ailuropoda melanoleuca 9646 Chordata Chordata 62.1 2.06e-5   NTclustered gi|1845353832|ref|XM_034642189.1| 9646 g87434 i0 85.965 0.375 57 8 38 0 96 152 4886 4942 PREDICTED: Ailuropoda melanoleuca uncharacterized LOC117795940 (LOC117795940), mRNA blastn 57 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
28012702 28012702 PRJEB39269_P_NODE_65325_length_171_cov_2.250000_g64920_i0 PRJEB39269 65325 171 2.25 3.8475 Staurois parvus 386267 Chordata Chordata 51.6 1.4e-6   NR CAI9618505.1 386267 g64920 i0 43.9 1 57 31 98.2 1 171 4 38 94 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 171 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28738735 28738735 PRJEB39269_P_NODE_64907_length_172_cov_1.120301_g64502_i0 PRJEB39269 64907 172 1.120301 1.92691772 Staurois parvus 386267 Chordata Chordata 62 1.16e-10   NR CAI9618505.1 386267 g64502 i0 53.5 1.5 43 20 75 0 1 129 9 51 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 258 62 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28770234 28770234 PRJEB39269_P_NODE_58367_length_180_cov_2.531915_g57962_i0 PRJEB39269 58367 180 2.531915 4.557447 Polypterus senegalus 55291 Chordata Chordata 49.3 6.43e-5   NR XP_039600642.1 55291 g57962 i0 64.7 1.16666666666667 34 12 56.7 0 178 77 199 232 XP_039600642.1 E3 SUMO-protein ligase ZBED1-like [Polypterus senegalus] diamond 210 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29243963 29243963 PRJEB39269_P_NODE_80149_length_159_cov_0.941667_g79744_i0 PRJEB39269 80149 159 0.941667 1.49725053 Pseudophryne corroboree 495146 Chordata Chordata 61.6 2.54e-9   NR XP_063810519.1 495146 g79744 i0 56 0.943396226415094 50 22 94.3 0 9 158 208 257 XP_063810519.1 toll-like receptor 7 [Pseudophryne corroboree] diamond 150 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Myobatrachidae Pseudophryne Pseudophryne corroboree
29426582 29426582 PRJEB39269_P_NODE_90429_length_151_cov_1.098214_g90024_i0 PRJEB39269 90429 151 1.098214 1.65830314 root 1 Root_unresolved Root_unresolved 110 1.07e-26   NR XP_030109804.2 10090 g90024 i0 100 10.9271523178808 50 0 99.3 0 1 150 90 139 XP_030109804.2 uncharacterized protein Gm52666 [Mus musculus] diamond 1650 110 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30191207 30191207 PRJEB39269_P_NODE_71292_length_167_cov_0.898438_g70887_i0 PRJEB39269 71292 167 0.898438 1.50039146 Engystomops pustulosus 76066 Chordata Chordata 59.7 6.53e-10   NR KAG8573553.1 76066 g70887 i0 65.5 0.988023952095808 55 19 98.8 0 2 166 1 55 KAG8573553.1 hypothetical protein GDO81_012454 [Engystomops pustulosus] diamond 165 59.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
30854785 30854785 PRJEB39269_P_NODE_59834_length_178_cov_2.266187_g59429_i0 PRJEB39269 59834 178 2.266187 4.03381286 Suricata suricatta 37032 Chordata Chordata 98.6 2.66e-22   NR XP_029793673.1 37032 g59429 i0 98 27.7921348314607 50 1 84.3 0 178 29 438 487 XP_029793673.1 transmembrane protein 87B isoform X3 [Suricata suricatta] diamond 4947 98.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Herpestidae Suricata Suricata suricatta
31455495 31455495 PRJEB39269_P_NODE_14776_length_365_cov_2.346626_g14371_i0 PRJEB39269 14776 365 2.346626 8.5651849 Polypterus senegalus 55291 Chordata Chordata 43.5 0.0266   NR KAG2471189.1 55291 g14371 i0 57.1 0.287671232876712 35 15 28.8 0 208 312 92 126 KAG2471189.1 TCB1 transposase, partial [Polypterus senegalus] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31859881 31859881 PRJEB39269_P_NODE_75997_length_162_cov_1.146341_g75592_i0 PRJEB39269 75997 162 1.146341 1.85707242 Vespertilionidae 9431 Chordata Chordata 68.9 6.45e-12   NR XP_054581941.1 29078 g75592 i0 94.3 1.94444444444444 35 2 64.8 0 57 161 84 118 XP_054581941.1 cytosolic 5'-nucleotidase 3A isoform X1 [Eptesicus fuscus] diamond 315 68.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Eptesicus Eptesicus fuscus
32081436 32081436 PRJEB39269_P_NODE_77838_length_160_cov_1.355372_g77433_i0 PRJEB39269 77838 160 1.355372 2.1685952 Mammalia 40674 Chordata Chordata 51.6 9.13e-6   NR KAG5195681.1 9940 g77433 i0 93.3 1.6875 30 2 56.3 0 2 91 1184 1213 KAG5195681.1 hypothetical protein JEQ12_011976 [Ovis aries] diamond 270 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;