RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB39269" and tax_clade = "Haptista"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJEB39269 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1331337 1331337 PRJEB39269_P_NODE_33702_length_238_cov_1.482412_g33297_i0 PRJEB39269 33702 238 1.482412 3.52814056 Meringosphaera mediterranea 2837474 Root_unresolved Root_unresolved 257 4.22e-64   NTclustered gi|2557275733|gb|OQ161671.1| 2837474 g33297 i0 86.134 99.672268907563 238 33 100 0 1 238 54373 54610 Meringosphaera mediterranea isolate SAG6 chloroplast, complete genome blastn 23722 257 1 Eukaryota Haptista     Centroplasthelida     Meringosphaera Meringosphaera mediterranea
18840933 18840933 PRJEB39269_P_NODE_48635_length_197_cov_0.968354_g48230_i0 PRJEB39269 48635 197 0.968354 1.90765738 Emiliania 2902 Haptophyta other_Eukaryota 331 1.96e-86   NTclustered gi|451352890|gb|JX680395.1| 171259 g48230 i0 96.954 100 197 6 100 0 1 197 562 366 Uncultured haptophyte clone EV3-Pry1-C13 18S ribosomal RNA gene, partial sequence blastn 19700 331 1 Eukaryota Haptista   Haptophyta         Haptophyta environmental samples
31328880 31328880 PRJEB39269_P_NODE_67396_length_170_cov_2.564885_g66991_i0 PRJEB39269 67396 170 2.564885 4.3603045 Prymnesium parvum 97485 Haptophyta other_Eukaryota 86.7 2.51e-18   NR ABV25606.1 97485 g66991 i0 75 5.89411764705882 56 13 98.8 1 169 2 128 182 ABV25606.1 putative mitochondrial ADP/ATP translocase 2 [Prymnesium parvum] diamond 1002 86.7 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;