RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB39269", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB39269 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28486146 28486146 PRJEB39269_P_NODE_58527_length_180_cov_1.730496_g58122_i0 PRJEB39269 58527 180 1.730496 3.1148928 Chlorobium phaeovibrioides 1094 Bacteria Bacteria 44.3 0.00459   NR WP_149998171.1 1094 g58122 i0 35.8 0.883333333333333 53 32 88.3 1 21 179 484 534 WP_149998171.1 protein DpdE [Chlorobium phaeovibrioides] diamond 159 44.3 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides
32688540 32688540 PRJEB39269_P_NODE_34800_length_234_cov_1.564103_g34395_i0 PRJEB39269 34800 234 1.564103 3.66000102 Chlorobi bacterium OLB7 1619898 Bacteria Bacteria 81.3 5.49e-16   NR KXK54875.1 1619898 g34395 i0 56.4 1 78 33 98.7 1 233 3 242 319 KXK54875.1 MAG: hypothetical protein UZ07_CHB004002402 [Chlorobi bacterium OLB7] diamond 234 81.3 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium OLB7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;