RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB36940" and tax_phylum = "Olpidiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB36940 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1331031 1331031 PRJEB36940_P_NODE_16002_length_242_cov_0.911243_g15873_i0 PRJEB36940 16002 242 0.911243 2.20520806 Olpidium brassicae 70189 Fungi Fungi 171 5.77e-38   NTclustered gi|358030887|dbj|AB609177.1| 70189 g15873 i0 88.652 12.9876033057851 141 14 58 2 102 241 1556 1417 Olpidium brassicae EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19784, clone: 2 blastn 3143 171 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
11534961 11534961 PRJEB36940_P_NODE_2650_length_520_cov_2.847875_g2523_i0 PRJEB36940 2650 520 2.847875 14.80895 Fungi 4751 Fungi Fungi 234 9.36e-71   NR BAL15351.1 278681 g2523 i0 62.8 10.8519230769231 172 64 99.2 0 518 3 90 261 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 5643 234 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
12810277 12810277 PRJEB36940_P_NODE_1731_length_637_cov_1.764184_g1611_i0 PRJEB36940 1731 637 1.764184 11.23785208 Olpidium brassicae 70189 Fungi Fungi 316 2.03e-81   NTclustered gi|358030887|dbj|AB609177.1| 70189 g1611 i0 76.599 65.2778649921507 594 127 92 10 50 637 1683 1096 Olpidium brassicae EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19784, clone: 2 blastn 41582 316 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
19182350 19182350 PRJEB36940_P_NODE_7756_length_310_cov_3.573840_g7627_i0 PRJEB36940 7756 310 3.57384 11.078904 Olpidium bornovanus 278681 Fungi Fungi 324 5.56e-84   NTclustered gi|358030905|dbj|AB609186.1| 278681 g7627 i0 87.063 91.5032258064516 286 37 92 0 1 286 729 444 Olpidium bornovanus mRNA for actin, partial cds, clone: 4 blastn 28366 324 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
29875442 29875442 PRJEB36940_P_NODE_12571_length_251_cov_3.617978_g12442_i0 PRJEB36940 12571 251 3.617978 9.08112478 Olpidium bornovanus 278681 Fungi Fungi 82 4.6e-18   NR KAG5461717.1 278681 g12442 i0 60.9 4.98406374501992 64 25 76.5 0 58 249 3 66 KAG5461717.1 MAG: 60S ribosomal protein L33-A-like protein [Olpidium bornovanus] diamond 1251 82 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
30532221 30532221 PRJEB36940_P_NODE_4993_length_382_cov_1.501618_g4864_i0 PRJEB36940 4993 382 1.501618 5.73618076 Eukaryota 2759 Fungi Fungi 141 9.67e-41   NR KAG5461717.1 278681 g4864 i0 64.1 7.38219895287958 103 37 80.9 0 310 2 3 105 KAG5461717.1 MAG: 60S ribosomal protein L33-A-like protein [Olpidium bornovanus] diamond 2820 141 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;