RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where bioproject = "PRJEB36940", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 32 ✖

tax_phylum 1

  • Myxococcota · 32 ✖

tax_kingdom 1

bioproject 1

  • PRJEB36940 · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1330973 1330973 PRJEB36940_P_NODE_10182_length_275_cov_1.009901_g10053_i0 PRJEB36940 10182 275 1.009901 2.77722775 Nannocystis punicea 2995304 Bacteria Bacteria 263 1.07e-65   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g10053 i0 85.944 86.9309090909091 249 32 90 3 28 275 5377565 5377319 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 23906 263 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
7709103 7709103 PRJEB36940_P_NODE_15207_length_244_cov_0.906433_g15078_i0 PRJEB36940 15207 244 0.906433 2.21169652 Labilithrix luteola 1391654 Bacteria Bacteria 385 1.91e-102   NTclustered gi|913610804|gb|CP012333.1| 1391654 g15078 i0 95.082 211.147540983607 244 12 100 0 1 244 3943509 3943752 Labilithrix luteola strain DSM 27648, complete genome blastn 51520 385 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
10259516 10259516 PRJEB36940_P_NODE_2389_length_547_cov_7.478903_g2263_i0 PRJEB36940 2389 547 7.478903 40.90959941 Bacteria 2 Bacteria Bacteria 165 3.779999999999999e-48   NR HPH68303.1 2212474 g2263 i0 52.1 5.43510054844607 163 76 88.8 2 60 545 5 166 HPH68303.1 hypothetical protein [Kofleriaceae bacterium] diamond 2973 166 0.993975903614458 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
14084961 14084961 PRJEB36940_P_NODE_10252_length_274_cov_1.263682_g10123_i0 PRJEB36940 10252 274 1.263682 3.46248868 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 165 6.619999999999999e-47   NR MCC7108348.1 2026735 g10123 i0 88.9 0.985401459854015 90 10 98.5 0 2 271 47 136 MCC7108348.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Deltaproteobacteria bacterium] diamond 270 165 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
15358841 15358841 PRJEB36940_P_NODE_11153_length_264_cov_1.214660_g11024_i0 PRJEB36940 11153 264 1.21466 3.2067024 Nannocystaceae bacterium 2545255 Bacteria Bacteria 166 2.72e-50   NR MEZ4451588.1 2545255 g11024 i0 88.5 7.875 87 10 98.9 0 262 2 6 92 MEZ4451588.1 peptidylprolyl isomerase [Nannocystaceae bacterium] diamond 2079 166 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
22665836 22665836 PRJEB36940_P_NODE_16398_length_229_cov_2.596154_g16269_i0 PRJEB36940 16398 229 2.596154 5.94519266 Myxococcia 32015 Bacteria Bacteria 363 8.309999999999999e-96   NTclustered gi|913610804|gb|CP012333.1| 1391654 g16269 i0 95.197 267.829694323144 229 11 100 0 1 229 3944430 3944658 Labilithrix luteola strain DSM 27648, complete genome blastn 61333 363 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
25215098 25215098 PRJEB36940_P_NODE_14720_length_245_cov_0.906977_g14591_i0 PRJEB36940 14720 245 0.906977 2.22209365 root 1 Root_unresolved Root_unresolved 405 1.47e-108   NTclustered gi|507148211|ref|NR_103018.1| 56 g14591 i0 97.083 130.889795918367 240 7 98 0 6 245 1258 1497 Sorangium cellulosum strain So ce 56 23S ribosomal RNA gene, complete sequence blastn 32068 405 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
26811836 26811836 PRJEB36940_P_NODE_7521_length_315_cov_1.785124_g7392_i0 PRJEB36940 7521 315 1.785124 5.6231406 Haliangium ochraceum 80816 Bacteria Bacteria 63.5 2.98e-9   NR WP_012829951.1 80816 g7392 i0 34.7 0.961904761904762 101 61 96.2 2 315 13 172 267 WP_012829951.1 CAP domain-containing protein [Haliangium ochraceum] diamond 303 63.5 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
26843640 26843640 PRJEB36940_P_NODE_12381_length_252_cov_1.262570_g12252_i0 PRJEB36940 12381 252 1.26257 3.1816764 Myxococcota bacterium 2818507 Bacteria Bacteria 52.4 1.63e-5   NR MEL6177379.1 2818507 g12252 i0 44.8 1.53571428571429 58 31 67.9 1 184 14 295 352 MEL6177379.1 DUF4419 domain-containing protein [Myxococcota bacterium] diamond 387 52.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
26875395 26875395 PRJEB36940_P_NODE_11701_length_258_cov_1.421622_g11572_i0 PRJEB36940 11701 258 1.421622 3.66778476 Kofleriaceae bacterium 2212474 Bacteria Bacteria 57.4 3.12e-7   NR MEZ4399706.1 2212474 g11572 i0 40 0.813953488372093 70 41 80.2 1 1 207 147 216 MEZ4399706.1 hypothetical protein [Kofleriaceae bacterium] diamond 210 57.4 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27279721 27279721 PRJEB36940_P_NODE_10543_length_271_cov_1.075758_g10414_i0 PRJEB36940 10543 271 1.075758 2.91530418 Pseudomonadati 3379134 Bacteria Bacteria 76.3 3.6e-14   NR HVE86459.1 2026763 g10414 i0 43.7 5.77859778597786 87 49 96.3 0 269 9 30 116 HVE86459.1 SDR family oxidoreductase [Myxococcales bacterium] diamond 1566 76.6 0.996083550913838 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27317961 27317961 PRJEB36940_P_NODE_16183_length_237_cov_2.841463_g16054_i0 PRJEB36940 16183 237 2.841463 6.73426731 Nannocystaceae bacterium 2545255 Bacteria Bacteria 44.3 0.00973   NR HWB78579.1 2545255 g16054 i0 43.1 1.56962025316456 58 25 63.3 2 220 71 308 365 HWB78579.1 Ig-like domain-containing protein [Nannocystaceae bacterium] diamond 372 44.3 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
27317969 27317969 PRJEB36940_P_NODE_7643_length_313_cov_1.083333_g7514_i0 PRJEB36940 7643 313 1.083333 3.39083229 Myxococcota bacterium 2818507 Bacteria Bacteria 64.7 1.69e-9   NR MEW5847593.1 2818507 g7514 i0 37.3 0.977635782747604 102 59 97.8 3 308 3 886 982 MEW5847593.1 hypothetical protein [Myxococcota bacterium] diamond 306 64.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27412809 27412809 PRJEB36940_P_NODE_7123_length_324_cov_0.928287_g6994_i0 PRJEB36940 7123 324 0.928287 3.00764988 Polyangiaceae bacterium 2268199 Bacteria Bacteria 59.3 8.18e-8   NR MBX3181706.1 2268199 g6994 i0 35.1 0.898148148148148 97 57 88 3 40 324 19 111 MBX3181706.1 N-formylglutamate amidohydrolase [Polyangiaceae bacterium] diamond 291 59.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28012673 28012673 PRJEB36940_P_NODE_3265_length_470_cov_0.979849_g3137_i0 PRJEB36940 3265 470 0.979849 4.6052903 Cystobacter sp. 1965334 Bacteria Bacteria 70.5 5.76e-12   NR MET0402110.1 1965334 g3137 i0 40.6 1.58936170212766 128 71 81.7 2 468 85 33 155 MET0402110.1 MAPEG family protein [Cystobacter sp.] diamond 747 70.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter sp.
28359645 28359645 PRJEB36940_P_NODE_12266_length_253_cov_0.866667_g12137_i0 PRJEB36940 12266 253 0.866667 2.19266751 Nannocystaceae bacterium 2545255 Bacteria Bacteria 69.7 1.32e-11   NR MEZ4381494.1 2545255 g12137 i0 38.8 0.948616600790514 80 47 94.9 1 1 240 238 315 MEZ4381494.1 hypothetical protein [Nannocystaceae bacterium] diamond 240 69.7 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
28738712 28738712 PRJEB36940_P_NODE_4687_length_394_cov_2.616822_g4558_i0 PRJEB36940 4687 394 2.616822 10.31027868 Myxococcus xanthus 34 Bacteria Bacteria 89.7 5e-20   NR WP_171439897.1 34 g4558 i0 58 0.616751269035533 81 32 61.7 1 244 2 5 83 WP_171439897.1 HNH endonuclease [Myxococcus xanthus] diamond 243 89.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
28770198 28770198 PRJEB36940_P_NODE_12867_length_251_cov_0.865169_g12738_i0 PRJEB36940 12867 251 0.865169 2.17157419 Myxococcota bacterium 2818507 Bacteria Bacteria 52.8 1.16e-5   NR MFM7200887.1 2818507 g12738 i0 39.5 1.88844621513944 76 44 89.6 2 246 22 49 123 MFM7200887.1 WD40/YVTN/BNR-like repeat-containing protein [Myxococcota bacterium] diamond 474 52.8 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28896437 28896437 PRJEB36940_P_NODE_14708_length_245_cov_0.976744_g14579_i0 PRJEB36940 14708 245 0.976744 2.3930228 Myxococcaceae bacterium 2484252 Bacteria Bacteria 149 1.27e-41   NR RYZ13579.1 2484252 g14579 i0 88.9 0.991836734693878 81 9 99.2 0 245 3 99 179 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 243 149 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28896443 28896443 PRJEB36940_P_NODE_2308_length_556_cov_1.780538_g2182_i0 PRJEB36940 2308 556 1.780538 9.89979128 Stigmatella hybrida 394097 Bacteria Bacteria 74.7 6.25e-12   NR WP_225412360.1 394097 g2182 i0 31.4 3.24280575539568 188 118 98.7 5 551 3 168 349 WP_225412360.1 choice-of-anchor A family protein [Stigmatella hybrida] diamond 1803 74.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella hybrida
29805557 29805557 PRJEB36940_P_NODE_15911_length_242_cov_0.917160_g15782_i0 PRJEB36940 15911 242 0.91716 2.2195272 Bacteria 2 Bacteria Bacteria 49.3 1.79e-4   NR MEQ8279025.1 2026735 g15782 i0 91.7 9.45867768595041 24 2 29.8 0 1 72 195 218 MEQ8279025.1 molecular chaperone DnaK [Deltaproteobacteria bacterium] diamond 2289 49.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29970112 29970112 PRJEB36940_P_NODE_14051_length_247_cov_0.896552_g13922_i0 PRJEB36940 14051 247 0.896552 2.21448344 Polyangiales bacterium 3034171 Bacteria Bacteria 45.8 0.00321   NR MFO0649278.1 3034171 g13922 i0 40.7 0.716599190283401 59 31 69.2 2 1 171 42 98 MFO0649278.1 hypothetical protein [Polyangiales bacterium] diamond 177 45.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
30096390 30096390 PRJEB36940_P_NODE_14872_length_245_cov_0.901163_g14743_i0 PRJEB36940 14872 245 0.901163 2.20784935 Myxococcota bacterium 2818507 Bacteria Bacteria 140 9.36e-40   NR HNH48373.1 2818507 g14743 i0 76.3 0.979591836734694 80 19 98 0 240 1 28 107 HNH48373.1 M13 family metallopeptidase [Myxococcota bacterium] diamond 240 140 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30406297 30406297 PRJEB36940_P_NODE_5693_length_359_cov_1.458042_g5564_i0 PRJEB36940 5693 359 1.458042 5.23437078 Pseudomonadati 3379134 Bacteria Bacteria 132 3.99e-36   NR MEK6759795.1 2026735 g5564 i0 51.3 4.74651810584958 115 55 95.3 1 14 355 1 115 MEK6759795.1 NAD(P)H:quinone oxidoreductase [Deltaproteobacteria bacterium] diamond 1704 132 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30538812 30538812 PRJEB36940_P_NODE_12673_length_251_cov_0.876404_g12544_i0 PRJEB36940 12673 251 0.876404 2.19977404 Polyangiaceae bacterium 2268199 Bacteria Bacteria 86.7 5.44e-18   NR HMJ51797.1 2268199 g12544 i0 60.7 2.00796812749004 84 32 99.2 1 251 3 95 178 HMJ51797.1 NAD(P)-dependent alcohol dehydrogenase [Polyangiaceae bacterium] diamond 504 86.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30949736 30949736 PRJEB36940_P_NODE_10214_length_274_cov_1.940299_g10085_i0 PRJEB36940 10214 274 1.940299 5.31641926 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.5 1.51e-7   NR MBM4366744.1 2026735 g10085 i0 39.1 0.700729927007299 64 39 70.1 0 83 274 15 78 MBM4366744.1 VWA domain-containing protein [Deltaproteobacteria bacterium] diamond 192 58.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31265620 31265620 PRJEB36940_P_NODE_12635_length_251_cov_1.314607_g12506_i0 PRJEB36940 12635 251 1.314607 3.29966357 Polyangiaceae bacterium 2268199 Bacteria Bacteria 44.3 0.00662   NR HLM73208.1 2268199 g12506 i0 42.3 0.621513944223108 52 28 62.2 1 222 67 90 139 HLM73208.1 hypothetical protein [Polyangiaceae bacterium] diamond 156 44.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31708406 31708406 PRJEB36940_P_NODE_15857_length_242_cov_0.923077_g15728_i0 PRJEB36940 15857 242 0.923077 2.23384634 Myxococcota bacterium 2818507 Bacteria Bacteria 75.1 1.36e-13   NR MCK6509625.1 2818507 g15728 i0 58.5 0.805785123966942 65 21 76.9 2 2 187 157 218 MCK6509625.1 hypothetical protein [Myxococcota bacterium] diamond 195 75.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32056406 32056406 PRJEB36940_P_NODE_8818_length_292_cov_1.351598_g8689_i0 PRJEB36940 8818 292 1.351598 3.94666616 Myxococcus landrumus 2813577 Bacteria Bacteria 55.5 2.25e-6   NR WP_206719064.1 2813577 g8689 i0 38 0.945205479452055 92 54 91.4 1 284 18 221 312 WP_206719064.1 MopE-related protein [Myxococcus landrumus] diamond 276 55.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus landrumensis
32278124 32278124 PRJEB36940_P_NODE_4259_length_414_cov_1.806452_g4130_i0 PRJEB36940 4259 414 1.806452 7.47871128 Vitiosangium sp. GDMCC 1.1324 2138576 Bacteria Bacteria 75.5 4.7e-13   NR WP_146209832.1 2138576 g4130 i0 34.6 1.97101449275362 136 75 88.4 4 368 3 64 199 WP_146209832.1 hypothetical protein [Vitiosangium sp. GDMCC 1.1324] diamond 816 75.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Vitiosangium Vitiosangium sp. GDMCC 1.1324
32594319 32594319 PRJEB36940_P_NODE_2740_length_511_cov_1.251142_g2613_i0 PRJEB36940 2740 511 1.251142 6.39333562 Myxococcota bacterium 2818507 Bacteria Bacteria 56.2 1.21e-5   NR MDY0062934.1 2818507 g2613 i0 32.8 0.804305283757339 137 78 80.4 5 59 469 1309 1431 MDY0062934.1 PKD domain-containing protein [Myxococcota bacterium] diamond 411 56.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32745170 32745170 PRJEB36940_P_NODE_5580_length_363_cov_1.275862_g5451_i0 PRJEB36940 5580 363 1.275862 4.63137906 Pseudomonadati 3379134 Bacteria Bacteria 77.8 2.03e-14   NR MDH5676572.1 2026763 g5451 i0 47.6 1.41322314049587 84 42 68.6 2 254 6 1 83 MDH5676572.1 endonuclease/exonuclease/phosphatase family protein [Myxococcales bacterium] diamond 513 77.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;