RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJEB36940" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 15 ✖

tax_clade 1

bioproject 1

  • PRJEB36940 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
56748 56748 PRJEB36940_P_NODE_12261_length_253_cov_0.866667_g12132_i0 PRJEB36940 12261 253 0.866667 2.19266751 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.37e-4   NTclustered gi|915001563|ref|XM_013393067.1| 5801 g12132 i0 97.143 0.49802371541502 35 1 14 0 217 251 5548 5582 Eimeria acervulina phosphatidylinositol 3-and 4-kinase domain-containing protein, putative partial mRNA blastn 126 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
3882903 3882903 PRJEB36940_P_NODE_3644_length_445_cov_11.903226_g3515_i0 PRJEB36940 3644 445 11.903226 52.9693557 Babesia sp. Xinjiang 462227 SAR_Eukaryotes SAR_Eukaryotes 157 3e-46   NR XP_028869867.1 462227 g3515 i0 55.2 0.964044943820225 143 61 94.4 1 422 3 4 146 XP_028869867.1 Eukaryotic translation initiation factor 5A [Babesia sp. Xinjiang] diamond 429 157 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia sp. Xinjiang
14085039 14085039 PRJEB36940_P_NODE_2052_length_589_cov_15.038760_g1929_i0 PRJEB36940 2052 589 15.03876 88.5782964 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 202 2.13e-62   NR OEH76901.1 88456 g1929 i0 61.5 1.78777589134126 179 69 91.2 0 585 49 29 207 OEH76901.1 ribosomal protein rpl19 [Cyclospora cayetanensis] diamond 1053 202 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
23008907 23008907 PRJEB36940_P_NODE_8399_length_299_cov_1.026549_g8270_i0 PRJEB36940 8399 299 1.026549 3.06938151 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 184 1.12e-51   NR XP_013434282.1 51315 g8270 i0 83.8 138.010033444816 99 16 99.3 0 1 297 1962 2060 XP_013434282.1 pre-mRNA splicing factor prp8, putative, partial [Eimeria necatrix] diamond 41265 184 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
24282576 24282576 PRJEB36940_P_NODE_2900_length_497_cov_0.891509_g2773_i0 PRJEB36940 2900 497 0.891509 4.43079973 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 234 1.39e-70   NR XP_067925181.1 483139 g2773 i0 75.2 9.11468812877264 145 36 87.5 0 2 436 388 532 XP_067925181.1 seryl-trna [Cystoisospora suis] diamond 4530 236 0.991525423728814 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis
26837044 26837044 PRJEB36940_P_NODE_8681_length_294_cov_1.398190_g8552_i0 PRJEB36940 8681 294 1.39819 4.1106786 Piroplasmida 5863 SAR_Eukaryotes SAR_Eukaryotes 91.3 1.4e-20   NR XP_765368.1 333668 g8552 i0 53.7 2.90816326530612 95 37 96.9 1 285 1 1 88 XP_765368.1 60S ribosomal protein L18-3 [Theileria parva strain Muguga] diamond 855 91.3 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria parva
27343079 27343079 PRJEB36940_P_NODE_7343_length_319_cov_1.195122_g7214_i0 PRJEB36940 7343 319 1.195122 3.81243918 root 1 Root_unresolved Root_unresolved 50.1 2.5e-4   NR SCM09788.1 5826 g7214 i0 31.3 1.33542319749216 80 54 74.3 1 237 1 85 164 SCM09788.1 conserved Plasmodium protein, unknown function [Plasmodium chabaudi adami] diamond 426 50.4 0.994047619047619 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
27532307 27532307 PRJEB36940_P_NODE_10503_length_271_cov_1.565657_g10374_i0 PRJEB36940 10503 271 1.565657 4.24293047 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 59.7 5.55e-8   NR XP_008622699.1 54757 g10374 i0 38.8 5.38007380073801 85 49 94.1 2 270 16 293 374 XP_008622699.1 protein kinase 2, putative [Plasmodium vinckei vinckei] diamond 1458 59.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
27886135 27886135 PRJEB36940_P_NODE_7905_length_308_cov_0.897872_g7776_i0 PRJEB36940 7905 308 0.897872 2.76544576 Plasmodium inui San Antonio 1 1237626 SAR_Eukaryotes SAR_Eukaryotes 114 4.770000000000001e-27   NR XP_008817726.1 1237626 g7776 i0 52.2 9.7012987012987 92 44 89.6 0 1 276 323 414 XP_008817726.1 CAMK/CDPK protein kinase [Plasmodium inui San Antonio 1] diamond 2988 114 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium inui
28100515 28100515 PRJEB36940_P_NODE_6485_length_338_cov_1.750943_g6356_i0 PRJEB36940 6485 338 1.750943 5.91818734 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 103 6.98e-24   NR XP_067925660.1 483139 g6356 i0 50 3.21301775147929 98 46 87 1 324 31 209 303 XP_067925660.1 mc family transporter [Cystoisospora suis] diamond 1086 103 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis
29300484 29300484 PRJEB36940_P_NODE_7369_length_318_cov_2.134694_g7240_i0 PRJEB36940 7369 318 2.134694 6.78832692 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 69.7 6.5e-12   NR XP_067924047.1 483139 g7240 i0 40.9 2.4622641509434 88 45 76.4 2 247 5 23 110 XP_067924047.1 ran-specific gtpase-activating [Cystoisospora suis] diamond 783 69.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis
30026885 30026885 PRJEB36940_P_NODE_16311_length_232_cov_3.201258_g16182_i0 PRJEB36940 16311 232 3.201258 7.42691856 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 114 1.2499999999999998e-29   NR SBS81589.1 864141 g16182 i0 72.7 5.97413793103448 77 21 99.6 0 2 232 97 173 SBS81589.1 centrin-3, putative [Plasmodium ovale curtisi] diamond 1386 114 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
30216188 30216188 PRJEB36940_P_NODE_13592_length_248_cov_1.920000_g13463_i0 PRJEB36940 13592 248 1.92 4.7616 Theileria 5873 SAR_Eukaryotes SAR_Eukaryotes 105 7.88e-25   NR UKJ90802.1 68886 g13463 i0 59.8 1.92338709677419 82 33 99.2 0 246 1 1 82 UKJ90802.1 actin 1 [Theileria orientalis] diamond 477 105 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis
31107428 31107428 PRJEB36940_P_NODE_3935_length_431_cov_1.251397_g3806_i0 PRJEB36940 3935 431 1.251397 5.39352107 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 121 3.71e-29   NR XP_022586579.1 88456 g3806 i0 71.1 1.89327146171694 90 24 62.6 1 162 431 51 138 XP_022586579.1 ATP synthase subunit beta, mitochondrial [Cyclospora cayetanensis] diamond 816 121 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
31898204 31898204 PRJEB36940_P_NODE_15017_length_244_cov_1.421053_g14888_i0 PRJEB36940 15017 244 1.421053 3.46736932 Cardiosporidium cionae 476202 SAR_Eukaryotes SAR_Eukaryotes 72 1.03e-12   NR KAF8817711.1 476202 g14888 i0 46.8 2.91393442622951 79 41 95.9 1 239 6 7 85 KAF8817711.1 MaoC family domain-containing protein [Cardiosporidium cionae] diamond 711 72 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Cardiosporidium Cardiosporidium cionae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;