RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB36940", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJEB36940 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3882819 3882819 PRJEB36940_P_NODE_11664_length_258_cov_1.686486_g11535_i0 PRJEB36940 11664 258 1.686486 4.35113388 root 1 Root_unresolved Root_unresolved 120 3.7099999999999996e-31   NR KRT72293.1 1640514 g11535 i0 63.9 17.1162790697674 83 30 96.5 0 249 1 132 214 KRT72293.1 MAG: Methenyltetrahydrofolate cyclohydrolase [Deltaproteobacteria bacterium CSP1-8] diamond 4416 120 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CSP1-8
20457693 20457693 PRJEB36940_P_NODE_8757_length_293_cov_1.263636_g8628_i0 PRJEB36940 8757 293 1.263636 3.70245348 uncultured delta proteobacterium 34034 Bacteria Bacteria 231 3.25e-56   NTclustered gi|2874253888|emb|OY970063.1| 34034 g8628 i0 83.665 193.399317406143 251 35 85 6 44 292 628898 628652 MAG: uncultured delta proteobacterium isolate MFD10007.bin.1.119 genome assembly, chromosome: 1 blastn 56666 231 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;