RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB36940", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJEB36940 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28296533 28296533 PRJEB36940_P_NODE_13106_length_250_cov_0.875706_g12977_i0 PRJEB36940 13106 250 0.875706 2.189265 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 73.6 5.55e-13   NR XP_067779127.1 135588 g12977 i0 42.2 3.972 83 48 99.6 0 249 1 365 447 XP_067779127.1 peptidase M20 [Histomonas meleagridis] diamond 993 73.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
29742264 29742264 PRJEB36940_P_NODE_5030_length_381_cov_1.113636_g4901_i0 PRJEB36940 5030 381 1.113636 4.24295316 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 162 9.61e-44   NR XP_068352044.1 1144522 g4901 i0 62.7 1.99212598425197 126 46 98.4 1 5 379 583 708 XP_068352044.1 Alpha amylase, catalytic domain containing protein [Tritrichomonas foetus] diamond 759 163 0.993865030674847 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29907090 29907090 PRJEB36940_P_NODE_15151_length_244_cov_0.912281_g15022_i0 PRJEB36940 15151 244 0.912281 2.22596564 Pseudotrichonympha grassii 104083 Parabasalia other_Eukaryota 55.8 8.63e-7   NR BAF48677.1 104083 g15022 i0 46.6 0.713114754098361 58 31 71.3 0 176 3 2 59 BAF48677.1 enolase, partial [Pseudotrichonympha grassii] diamond 174 55.8 1 Eukaryota Metamonada   Parabasalia   Trichonymphida Teranymphidae Pseudotrichonympha Pseudotrichonympha grassii
32246625 32246625 PRJEB36940_P_NODE_8258_length_301_cov_2.035088_g8129_i0 PRJEB36940 8258 301 2.035088 6.12561488 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 47.8 0.0013   NR XP_067775923.1 135588 g8129 i0 34.6 0.807308970099668 81 52 80.7 1 295 53 188 267 XP_067775923.1 myosin heavy chain, embryonic smooth muscle isoform [Histomonas meleagridis] diamond 243 47.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;