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contig_metadata

24 rows where bioproject = "PRJEB3181" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 24 ✖

tax_clade 1

bioproject 1

  • PRJEB3181 · 24 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
56118 56118 PRJEB3181_S_NODE_18561_length_151_cov_1.741379_g18268_i0 PRJEB3181 18561 151 1.741379 2.62948229 Saccamoeba limax 136464 Tubulinea other_Eukaryota 278 1.87e-70   NTclustered gi|213950421|gb|EU869301.1| 136464 g18268 i0 100 31.3046357615894 150 0 99 0 2 151 791 642 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 4727 278 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
2606003 2606003 PRJEB3181_S_NODE_1503_length_407_cov_10.913978_g1213_i0 PRJEB3181 1503 407 10.913978 44.41989046 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 261 5.96e-65   NTclustered gi|511487963|gb|JX898537.1| 1260765 g1213 i0 81.79 37.014742014742 324 48 79 11 88 407 1 317 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 15065 261 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
7708193 7708193 PRJEB3181_P_NODE_14307_length_223_cov_2.260417_g14043_i0 PRJEB3181 14307 223 2.260417 5.04072991 Rhizamoeba sp. ATCC 50933 497999 Tubulinea other_Eukaryota 261 3.02e-65   NTclustered gi|167859754|gb|EU273459.1| 497999 g14043 i0 89.706 87.7533632286996 204 21 91 0 20 223 451 248 Rhizamoeba sp. ATCC 50933 actin gene, partial cds blastn 19569 261 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba sp. ATCC 50933
7708274 7708274 PRJEB3181_P_NODE_3687_length_400_cov_29.807588_g3447_i0 PRJEB3181 3687 400 29.807588 119.230352 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 717 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g3447 i0 99 72.4175 400 4 100 0 1 400 2696 2297 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28967 717 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
7708391 7708391 PRJEB3181_S_NODE_18547_length_151_cov_2.068966_g18254_i0 PRJEB3181 18547 151 2.068966 3.12413866 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 279 5.19e-71   NTclustered gi|399764168|gb|JQ271679.1| 1215977 g18254 i0 100 37 151 0 100 0 1 151 369 219 Copromyxa sp. PKD 2011 strain ZEB4 18S ribosomal RNA gene, partial sequence blastn 5587 279 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
8983100 8983100 PRJEB3181_P_NODE_7148_length_313_cov_4.535461_g6887_i0 PRJEB3181 7148 313 4.535461 14.19599293 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 178 4.63e-40   NTclustered gi|511487963|gb|JX898537.1| 1260765 g6887 i0 81.579 40.6421725239617 228 30 71 11 4 225 222 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 12721 178 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
11534109 11534109 PRJEB3181_P_NODE_1350_length_543_cov_12.998047_g788_i1 PRJEB3181 1350 543 12.998047 70.57939521 Flabellula citata 569951 Tubulinea other_Eukaryota 169 5.08e-37   NTclustered gi|209917186|gb|EU852654.1| 569951 g788 i1 78.148 33.0828729281768 270 36 47 10 1 254 625 363 Flabellula citata small subunit ribosomal RNA gene, partial sequence blastn 17964 169 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Flabellula Flabellula citata
11534131 11534131 PRJEB3181_P_NODE_2170_length_473_cov_26.595023_g1980_i0 PRJEB3181 2170 473 26.595023 125.79445879 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 785 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g1980 i0 96.617 69.8118393234672 473 16 100 0 1 473 2696 2224 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 33021 785 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
12809596 12809596 PRJEB3181_S_NODE_1531_length_404_cov_71.791328_g1241_i0 PRJEB3181 1531 404 71.791328 290.03696512 Tubulinea group 04 sp. CAL5 1215995 Tubulinea other_Eukaryota 645 1.3999999999999996e-180   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g1241 i0 99.716 19.9851485148515 352 1 87 0 1 352 188 539 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 8074 645 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
12809709 12809709 PRJEB3181_S_NODE_811_length_502_cov_4.541756_g546_i0 PRJEB3181 811 502 4.541756 22.79961512 Saccamoeba limax 136464 Tubulinea other_Eukaryota 894 0   NTclustered gi|213950421|gb|EU869301.1| 136464 g546 i0 98.81 55.8446215139442 504 3 99 2 1 501 768 1271 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 28034 894 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
14084419 14084419 PRJEB3181_S_NODE_3912_length_296_cov_4.632184_g3619_i0 PRJEB3181 3912 296 4.632184 13.71126464 Saccamoeba limax 136464 Tubulinea other_Eukaryota 547 2.8799999999999986e-151   NTclustered gi|213950421|gb|EU869301.1| 136464 g3619 i0 100 68.8581081081081 296 0 100 0 1 296 239 534 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 20382 547 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
16632893 16632893 PRJEB3181_P_NODE_9814_length_271_cov_2.879167_g9550_i0 PRJEB3181 9814 271 2.879167 7.80254257 Cryptodifflugia oviformis 1165352 Tubulinea other_Eukaryota 472 1.61e-128   NTclustered gi|2517949720|gb|OR125025.1| 1165352 g9550 i0 99.234 88.7527675276753 261 2 96 0 2 262 794 1054 Cryptodifflugia oviformis isolate strain_9 small subunit ribosomal RNA gene, partial sequence blastn 24052 472 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia oviformis
17907640 17907640 PRJEB3181_P_NODE_9015_length_283_cov_1.714286_g8751_i0 PRJEB3181 9015 283 1.714286 4.85142938 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 324 5.01e-84   NTclustered gi|292559443|ref|NC_013986.1| 5778 g8751 i0 94.313 1.48763250883392 211 12 75 0 73 283 26881 26671 Hartmannella vermiformis mitochondrion, complete genome blastn 421 324 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19181454 19181454 PRJEB3181_P_NODE_5936_length_337_cov_26.810458_g5680_i0 PRJEB3181 5936 337 26.810458 90.35124346 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 128 5.14e-25   NTclustered gi|667752759|gb|KJ542108.1| 1525729 g5680 i0 80.663 23.4154302670623 181 21 53 12 158 337 1911 1744 Ptolemeba bulliensis isolate Sk13-4e 18S ribosomal RNA gene, partial sequence blastn 7891 128 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis
20456757 20456757 PRJEB3181_P_NODE_21497_length_176_cov_2.200000_g21232_i0 PRJEB3181 21497 176 2.2 3.872 Spumochlamys perforata 675831 Tubulinea other_Eukaryota 63.9 6.86e-6   NTclustered gi|259595675|gb|FJ705339.1| 675831 g21232 i0 97.297 18.2897727272727 37 1 21 0 126 162 861 897 Spumochlamys perforata clone 2504 18S ribosomal RNA gene, partial sequence blastn 3219 63.9 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys perforata
23008116 23008116 PRJEB3181_S_NODE_15439_length_165_cov_2.638462_g15146_i0 PRJEB3181 15439 165 2.638462 4.3534623 Saccamoeba limax 136464 Tubulinea other_Eukaryota 243 7.63e-60   NTclustered gi|213950421|gb|EU869301.1| 136464 g15146 i0 99.254 42.1090909090909 134 1 81 0 32 165 2041 1908 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 6948 243 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
24281703 24281703 PRJEB3181_P_NODE_13040_length_234_cov_4.793103_g12776_i0 PRJEB3181 13040 234 4.793103 11.21586102 Saccamoeba limax 136464 Tubulinea other_Eukaryota 370 5.09e-98   NTclustered gi|213950421|gb|EU869301.1| 136464 g12776 i0 99.029 23.6111111111111 206 2 88 0 29 234 969 764 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 5525 370 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
24281780 24281780 PRJEB3181_P_NODE_5180_length_356_cov_25.593846_g4931_i0 PRJEB3181 5180 356 25.593846 91.11409176 Heleopera steppica 3035462 Tubulinea other_Eukaryota 135 3.25e-27   NTclustered gi|2460876680|gb|OQ646056.1| 3035462 g4931 i0 87.395 24.9044943820225 119 14 33 1 164 282 258 141 Heleopera steppica isolate M3-1 small subunit ribosomal RNA gene, partial sequence blastn 8866 135 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Heleoperidae Heleopera Heleopera steppica
24281839 24281839 PRJEB3181_S_NODE_1340_length_422_cov_79.364341_g1055_i0 PRJEB3181 1340 422 79.364341 334.91751902 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 560 5.46e-155   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g1055 i0 93.817 59.2227488151659 372 23 88 0 51 422 2659 2288 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24992 560 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
25214992 25214992 PRJEB3181_S_NODE_2580_length_341_cov_21171.604575_g2287_i0 PRJEB3181 2580 341 21171.604575 72195.17160075 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 508 1.59e-139   NTclustered gi|300078496|gb|GU001158.1| 5778 g2287 i0 100 29.7595307917889 275 0 81 0 3 277 946 1220 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10148 508 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28201711 28201711 PRJEB3181_P_NODE_25486_length_159_cov_3.335938_g25221_i0 PRJEB3181 25486 159 3.335938 5.30414142 Copromyxa protea 931554 Tubulinea other_Eukaryota 67 3.3e-11   NR BAN33737.1 931554 g25221 i0 86.1 5.13207547169811 36 5 67.9 0 159 52 427 462 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 816 67 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
29717183 29717183 PRJEB3181_P_NODE_24990_length_161_cov_2.607692_g24725_i0 PRJEB3181 24990 161 2.607692 4.19838412 Nebela penardiana 499102 Tubulinea other_Eukaryota 75.5 1.96e-15   NR AFX73073.1 499102 g24725 i0 73.6 0.987577639751553 53 14 98.8 0 1 159 55 107 AFX73073.1 14-3-3 protein, partial [Nebela penardiana] diamond 159 75.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Nebela Nebela penardiana
30191159 30191159 PRJEB3181_P_NODE_18732_length_191_cov_1.981250_g18468_i0 PRJEB3181 18732 191 1.98125 3.7841875 Copromyxa protea 931554 Tubulinea other_Eukaryota 84 5.1e-17   NR BAN33737.1 931554 g18468 i0 76.5 0.801047120418848 51 12 80.1 0 189 37 415 465 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 153 84 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
30886402 30886402 PRJEB3181_P_NODE_19954_length_184_cov_2.254902_g19690_i0 PRJEB3181 19954 184 2.254902 4.14901968 Hyalosphenia papilio 318532 Tubulinea other_Eukaryota 95.9 2.81e-23   NR AFX73065.1 318532 g19690 i0 82 2.98369565217391 61 11 99.5 0 184 2 14 74 AFX73065.1 14-3-3 protein, partial [Hyalosphenia papilio] diamond 549 95.9 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Hyalosphenia Hyalosphenia papilio

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;