RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB3181", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 8 ✖

tax_phylum 1

  • Spirochaetota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJEB3181 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3882119 3882119 PRJEB3181_P_NODE_724_length_658_cov_72.164274_g39_i3 PRJEB3181 724 658 72.164274 474.84092292 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 3.78e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g39 i3 81.461 17.2431610942249 178 30 27 3 223 398 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 11346 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
9917011 9917011 PRJEB3181_P_NODE_68_length_1342_cov_53.048818_g39_i1 PRJEB3181 68 1342 53.048818 711.91513756 Borreliella 64895 Bacteria Bacteria 143 7.920000000000001e-29   NTclustered gi|2537444985|gb|CP124072.1| 478174 g39 i1 74.041 33.9694485842027 443 74 32 32 694 1120 436792 436375 Borreliella carolinensis strain SCGT-18 chromosome, complete genome blastn 45587 143 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella carolinensis
10258746 10258746 PRJEB3181_P_NODE_69_length_1342_cov_48.572082_g39_i2 PRJEB3181 69 1342 48.572082 651.83734044 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 7.920000000000001e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g39 i2 81.461 31.8137108792846 178 30 13 3 223 398 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 42694 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
17907620 17907620 PRJEB3181_P_NODE_55_length_1387_cov_56.005900_g39_i0 PRJEB3181 55 1387 56.0059 776.801833 Spirochaetota bacterium 2202144 Bacteria Bacteria 143 8.2e-29   NTclustered gi|2649718696|emb|OZ001226.1| 2202144 g39 i0 81.461 33.0656092285508 178 30 13 3 223 398 74373 74549 MAG: Spirochaetota bacterium isolate 8b34eeeb-0c33-43c6-8155-d1d64b2f6b4c genome assembly, chromosome: 19 blastn 45862 143 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
27317946 27317946 PRJEB3181_S_NODE_15823_length_163_cov_2.195312_g15530_i0 PRJEB3181 15823 163 2.195312 3.57835856 Spirochaetota bacterium 2202144 Bacteria Bacteria 48.9 5.43e-5   NR HPS56872.1 2202144 g15530 i0 76 0.920245398773006 25 6 46 0 1 75 172 196 HPS56872.1 superoxide dismutase [Spirochaetota bacterium] diamond 150 48.9 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
28139023 28139023 PRJEB3181_S_NODE_5285_length_263_cov_5.837719_g4992_i0 PRJEB3181 5285 263 5.837719 15.35320097 Treponema sp. 166 Bacteria Bacteria 47.8 8.31e-4   NR MCR4953843.1 166 g4992 i0 33.3 0.958174904942966 84 50 90.1 2 258 22 670 752 MCR4953843.1 ankyrin repeat domain-containing protein [Treponema sp.] diamond 252 47.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
29938637 29938637 PRJEB3181_S_NODE_8871_length_212_cov_2.728814_g8578_i0 PRJEB3181 8871 212 2.728814 5.78508568 Spirochaetota bacterium 2202144 Bacteria Bacteria 48.1 3.16e-4   NR TXG81440.1 2202144 g8578 i0 41.3 0.891509433962264 63 36 89.2 1 6 194 771 832 TXG81440.1 MAG: hypothetical protein E6R13_06195, partial [Spirochaetota bacterium] diamond 189 48.1 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
32088033 32088033 PRJEB3181_P_NODE_12678_length_238_cov_1.811594_g12414_i0 PRJEB3181 12678 238 1.811594 4.31159372 Spirochaetota bacterium 2202144 Bacteria Bacteria 46.2 0.00189   NR MEM7182536.1 2202144 g12414 i0 47.8 1.17226890756303 46 21 58 1 154 17 147 189 MEM7182536.1 transglutaminase-like domain-containing protein [Spirochaetota bacterium] diamond 279 46.2 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;