RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB3181", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB3181 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15358170 15358170 PRJEB3181_S_NODE_12233_length_184_cov_2.510067_g11940_i0 PRJEB3181 12233 184 2.510067 4.61852328 Spongospora subterranea 70186 SAR_Eukaryotes SAR_Eukaryotes 110 9.18e-20   NTclustered gi|1150151083|ref|NC_034004.1| 70186 g11940 i0 81.618 51.2228260869565 136 21 73 4 10 144 16275 16407 Spongospora subterranea mitochondrion, complete genome blastn 9425 110 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora subterranea
28296521 28296521 PRJEB3181_P_NODE_6966_length_316_cov_11.101754_g6705_i0 PRJEB3181 6966 316 11.101754 35.08154264 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 63.5 5.65e-11   NR CEO98595.1 37360 g6705 i0 63.5 0.493670886075949 52 19 49.4 0 18 173 1 52 CEO98595.1 hypothetical protein PBRA_006708 [Plasmodiophora brassicae] diamond 156 63.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;