RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

31 rows where bioproject = "PRJEB3181", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 31 ✖

tax_clade 1

  • Sar · 31 ✖

bioproject 1

  • PRJEB3181 · 31 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1330413 1330413 PRJEB3181_S_NODE_3022_length_323_cov_16.121528_g2729_i0 PRJEB3181 3022 323 16.121528 52.07253544 Bodomorpha sp. HFCC55 624126 SAR_Eukaryotes SAR_Eukaryotes 399 9.4e-107   NTclustered gi|225216790|gb|FJ176705.1| 624126 g2729 i0 96.296 92.4117647058823 243 9 75 0 25 267 243 1 Bodomorpha sp. 28S ribosomal RNA gene, partial sequence blastn 29849 399 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha sp. HFCC55
4816738 4816738 PRJEB3181_S_NODE_18244_length_152_cov_4.401709_g17951_i0 PRJEB3181 18244 152 4.401709 6.69059768 Sandona 1239209 SAR_Eukaryotes SAR_Eukaryotes 276 6.770000000000001e-70   NTclustered gi|2163362299|dbj|LC663795.1| 563755 g17951 i0 99.342 99.9736842105263 152 1 100 0 1 152 607 758 Sandona mutans Flagella An1019C gene for 18S rRNA, partial sequence blastn 15196 276 1 Eukaryota Sar   Cercozoa   Glissomonadida Sandonidae Sandona Sandona mutans
4816757 4816757 PRJEB3181_S_NODE_5284_length_263_cov_6.328947_g4991_i0 PRJEB3181 5284 263 6.328947 16.64513061 Bodomorpha 188949 SAR_Eukaryotes SAR_Eukaryotes 411 3.439999999999999e-110   NTclustered gi|33309639|gb|AF411276.1| 188950 g4991 i0 98.701 87.7110266159696 231 3 88 0 33 263 995 765 Bodomorpha minima 18S ribosomal RNA gene, complete sequence blastn 23068 411 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
5158488 5158488 PRJEB3181_S_NODE_4165_length_289_cov_15.685039_g3872_i0 PRJEB3181 4165 289 15.685039 45.32976271 uncultured Cercozoa 175275 SAR_Eukaryotes SAR_Eukaryotes 412 1.0699999999999999e-110   NTclustered gi|1270185585|gb|MG266086.1| 175275 g3872 i0 94.096 93.2975778546713 271 16 94 0 1 271 352 622 Uncultured Cercozoa clone MossITSLSU68 large subunit ribosomal RNA gene, partial sequence blastn 26963 412 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
6091935 6091935 PRJEB3181_P_NODE_16205_length_208_cov_1.898305_g15941_i0 PRJEB3181 16205 208 1.898305 3.9484744 Rosculus 373137 SAR_Eukaryotes SAR_Eukaryotes 385 1.58e-102   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g15941 i0 100 5.27884615384615 208 0 100 0 1 208 613 406 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 1098 385 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
6434189 6434189 PRJEB3181_P_NODE_5786_length_341_cov_3.738710_g5531_i0 PRJEB3181 5786 341 3.73871 12.7490011 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 484 2.6799999999999994e-132   NTclustered gi|756877536|ref|NC_026310.1| 372086 g5531 i0 92.353 0.997067448680352 340 26 99 0 2 341 17806 18145 Paracercomonas marina strain ATCC 50344 mitochondrion, complete genome blastn 340 484 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
6434330 6434330 PRJEB3181_S_NODE_506_length_609_cov_16.996516_g279_i0 PRJEB3181 506 609 16.996516 103.50878244 Rosculus hawesi 2231161 SAR_Eukaryotes SAR_Eukaryotes 1057 0   NTclustered gi|1402550478|gb|MH488764.1| 2231161 g279 i0 98.036 30.6715927750411 611 6 100 3 1 609 834 1440 Rosculus hawesi isolate MSUPP161R small subunit ribosomal RNA gene, partial sequence blastn 18679 1057 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus hawesi
7708328 7708328 PRJEB3181_S_NODE_1167_length_443_cov_16511.740196_g887_i0 PRJEB3181 1167 443 16511.740196 73147.00906828 Rosculus vulgaris 2231165 SAR_Eukaryotes SAR_Eukaryotes 339 2.9399999999999997e-88   NTclustered gi|1402550474|gb|MH488760.1| 2231165 g887 i0 83.871 27.9277652370203 372 42 83 13 14 379 2197 2556 Rosculus vulgaris isolate CCA sequence blastn 12372 339 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus vulgaris
8983006 8983006 PRJEB3181_P_NODE_11348_length_252_cov_3.941176_g11084_i0 PRJEB3181 11348 252 3.941176 9.93176352 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 407 4.2299999999999995e-109   NTclustered gi|756877536|ref|NC_026310.1| 372086 g11084 i0 96 4.8531746031746 250 10 99 0 1 250 1691 1940 Paracercomonas marina strain ATCC 50344 mitochondrion, complete genome blastn 1223 407 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
8983016 8983016 PRJEB3181_P_NODE_1328_length_545_cov_2.184825_g1173_i0 PRJEB3181 1328 545 2.184825 11.90729625 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 610 7.05e-170   NTclustered gi|756877536|ref|NC_026310.1| 372086 g1173 i0 91.266 16.5394495412844 458 24 84 6 3 458 1352 909 Paracercomonas marina strain ATCC 50344 mitochondrion, complete genome blastn 9014 610 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
9917008 9917008 PRJEB3181_P_NODE_5628_length_344_cov_109.035144_g5374_i0 PRJEB3181 5628 344 109.035144 375.08089536 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 152 3.12e-32   NTclustered gi|290760487|gb|GQ144690.1| 629762 g5374 i0 96.703 26.4941860465116 91 3 26 0 254 344 1495 1405 Cercozoa sp. CC-2009d large subunit ribosomal RNA gene, partial sequence blastn 9114 152 1 Eukaryota Sar   Cercozoa         Cercozoa sp. CC-2009d
11534111 11534111 PRJEB3181_P_NODE_13790_length_227_cov_5.183673_g13526_i0 PRJEB3181 13790 227 5.183673 11.76693771 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 159 1.1599999999999999e-34   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g13526 i0 82.873 2.48017621145374 181 27 78 4 50 227 3901 3722 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 563 159 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
11534162 11534162 PRJEB3181_P_NODE_2870_length_434_cov_394.116625_g1144_i1 PRJEB3181 2870 434 394.116625 1710.4661525 Amorphochlora amoebiformis 1561963 SAR_Eukaryotes SAR_Eukaryotes 86.1 4.13e-12   NTclustered gi|893150443|dbj|AB996604.1| 1561963 g1144 i1 80.992 20.6520737327189 121 11 27 11 317 434 766 877 Amorphochlora amoebiformis nucleomorph DNA, chromosome: 3, complete sequence, strain: CCMP2058 blastn 8963 86.1 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Amorphochlora Amorphochlora amoebiformis
12467925 12467925 PRJEB3181_P_NODE_20090_length_183_cov_3.644737_g19826_i0 PRJEB3181 20090 183 3.644737 6.66986871 Bodomorpha 188949 SAR_Eukaryotes SAR_Eukaryotes 322 1.08e-83   NTclustered gi|82547952|gb|DQ211594.1| 188950 g19826 i0 98.889 94.5191256830601 180 2 98 0 1 180 213 34 Bodomorpha minima strain HFCC55 18S ribosomal RNA gene, partial sequence blastn 17297 322 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
12809473 12809473 PRJEB3181_P_NODE_1991_length_487_cov_22.905702_g1809_i0 PRJEB3181 1991 487 22.905702 111.55076874 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 534 3.87e-147   NTclustered gi|238617602|gb|FJ973377.1| 188950 g1809 i0 94.085 38.4866529774127 355 16 73 4 134 487 243 593 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 18743 534 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
12809618 12809618 PRJEB3181_S_NODE_18031_length_153_cov_2.237288_g17738_i0 PRJEB3181 18031 153 2.237288 3.42305064 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 261 1.91e-65   NTclustered gi|88792583|gb|DQ386164.1| 372086 g17738 i0 97.386 19.6601307189542 153 4 100 0 1 153 2520 2672 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 3008 261 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
15016686 15016686 PRJEB3181_S_NODE_10452_length_197_cov_44.666667_g10159_i0 PRJEB3181 10452 197 44.666667 87.99333399 Cercozoa 136419 SAR_Eukaryotes SAR_Eukaryotes 104 4.64e-18   NTclustered gi|290760486|gb|GQ144689.1| 361427 g10159 i0 83.761 61.4314720812183 117 11 57 8 86 197 2701 2588 Protaspis grandis large subunit ribosomal RNA gene, partial sequence blastn 12102 104 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Protaspis Protaspis grandis
15358226 15358226 PRJEB3181_S_NODE_2233_length_357_cov_20032.027950_g1940_i0 PRJEB3181 2233 357 20032.02795 71514.3397815 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 412 1.35e-110   NTclustered gi|756877536|ref|NC_026310.1| 372086 g1940 i0 91.362 14.3865546218487 301 26 84 0 57 357 18156 17856 Paracercomonas marina strain ATCC 50344 mitochondrion, complete genome blastn 5136 412 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
15358325 15358325 PRJEB3181_S_NODE_9273_length_208_cov_1.699422_g8980_i0 PRJEB3181 9273 208 1.699422 3.53479776 Chlorarachniophyceae sp. P329 467061 SAR_Eukaryotes SAR_Eukaryotes 99 2.31e-16   NTclustered gi|220983374|dbj|AB453010.1| 467061 g8980 i0 90.667 11.6923076923077 75 6 36 1 102 175 3083 3009 Chlorarachniophyceae sp. P329 gene for nuclear large subunit ribosomal RNA, partial sequence blastn 2432 99 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae       Chlorarachniophyceae sp. P329
16632800 16632800 PRJEB3181_P_NODE_14554_length_221_cov_2.531579_g14290_i0 PRJEB3181 14554 221 2.531579 5.59478959 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 403 4.69e-108   NTclustered gi|238617602|gb|FJ973377.1| 188950 g14290 i0 99.548 58.9864253393665 221 1 100 0 1 221 1869 2089 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 13036 403 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
16632966 16632966 PRJEB3181_S_NODE_1994_length_369_cov_103.850299_g1702_i0 PRJEB3181 1994 369 103.850299 383.20760331 Rosculus hawesi 2231161 SAR_Eukaryotes SAR_Eukaryotes 584 2.7999999999999987e-162   NTclustered gi|1402550478|gb|MH488764.1| 2231161 g1702 i0 100 13.4634146341463 316 0 86 0 1 316 248 563 Rosculus hawesi isolate MSUPP161R small subunit ribosomal RNA gene, partial sequence blastn 4968 584 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus hawesi
17907641 17907641 PRJEB3181_P_NODE_9035_length_282_cov_10.135458_g8771_i0 PRJEB3181 9035 282 10.135458 28.58199156 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 361 3.81e-95   NTclustered gi|82547952|gb|DQ211594.1| 188950 g8771 i0 95.217 67.9539007092199 230 8 81 3 55 282 851 623 Bodomorpha minima strain HFCC55 18S ribosomal RNA gene, partial sequence blastn 19163 361 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
17907695 17907695 PRJEB3181_S_NODE_16495_length_160_cov_1.760000_g16202_i0 PRJEB3181 16495 160 1.76 2.816 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 254 3.39e-63   NTclustered gi|756877536|ref|NC_026310.1| 372086 g16202 i0 97.333 1.71875 150 3 93 1 11 159 1953 1804 Paracercomonas marina strain ATCC 50344 mitochondrion, complete genome blastn 275 254 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
21732641 21732641 PRJEB3181_P_NODE_1298_length_547_cov_246.682171_g1144_i0 PRJEB3181 1298 547 246.682171 1349.35147537 Amorphochlora amoebiformis 1561963 SAR_Eukaryotes SAR_Eukaryotes 86.1 5.3e-12   NTclustered gi|893150443|dbj|AB996604.1| 1561963 g1144 i0 80.992 16.3857404021938 121 11 22 11 430 547 766 877 Amorphochlora amoebiformis nucleomorph DNA, chromosome: 3, complete sequence, strain: CCMP2058 blastn 8963 86.1 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Amorphochlora Amorphochlora amoebiformis
22665722 22665722 PRJEB3181_S_NODE_1958_length_372_cov_17.661721_g1666_i0 PRJEB3181 1958 372 17.661721 65.70160212 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 132 4.42e-26   NTclustered gi|262262868|gb|FJ797459.1| 686761 g1666 i0 86.066 33.6586021505376 122 17 33 0 248 369 409 288 Cercomonas gigantica strain NY1 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12521 132 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas gigantica
24281840 24281840 PRJEB3181_S_NODE_13600_length_175_cov_2.307143_g13307_i0 PRJEB3181 13600 175 2.307143 4.03750025 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 159 8.44e-35   NTclustered gi|238617605|gb|FJ973380.1| 45107 g13307 i0 86.275 32.4171428571429 153 13 85 5 25 173 1795 1647 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 5673 159 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
27633694 27633694 PRJEB3181_P_NODE_4424_length_376_cov_25.994203_g4176_i0 PRJEB3181 4424 376 25.994203 97.73820328 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 83.2 1.2e-17   NR MES1912234.1 1215613 g4176 i0 54.7 1.70744680851064 75 31 59.8 2 346 122 49 120 MES1912234.1 hypothetical protein [Cercozoa sp. M6MM] diamond 642 83.2 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
27917629 27917629 PRJEB3181_P_NODE_5005_length_360_cov_34.796353_g4756_i0 PRJEB3181 5005 360 34.796353 125.2668708 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 83.6 7.17e-18   NR MES1912234.1 1215613 g4756 i0 54.7 1.25 75 31 62.5 2 330 106 49 120 MES1912234.1 hypothetical protein [Cercozoa sp. M6MM] diamond 450 83.6 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
30981375 30981375 PRJEB3181_P_NODE_9974_length_269_cov_3.151261_g9710_i0 PRJEB3181 9974 269 3.151261 8.47689209 Lotharella oceanica 641309 SAR_Eukaryotes SAR_Eukaryotes 67.4 8.99e-13   NR AIB09582.1 641309 g9710 i0 57.4 0.602230483271376 54 23 60.2 0 47 208 1 54 AIB09582.1 hypothetical protein M951_chr1100 [Lotharella oceanica] diamond 162 67.4 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Lotharella Lotharella oceanica
31487222 31487222 PRJEB3181_P_NODE_18336_length_193_cov_3.216049_g18072_i0 PRJEB3181 18336 193 3.216049 6.20697457 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 87 5.5600000000000006e-21   NR MES1911722.1 1215613 g18072 i0 73.1 0.808290155440414 52 14 80.8 0 8 163 1 52 MES1911722.1 hypothetical protein [Cercozoa sp. M6MM] diamond 156 87 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
32656791 32656791 PRJEB3181_P_NODE_19000_length_189_cov_4.284810_g18736_i0 PRJEB3181 19000 189 4.28481 8.0982909 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 49.7 6.14e-5   NR MES1907989.1 1215613 g18736 i0 66 0.746031746031746 47 12 74.6 1 172 32 279 321 MES1907989.1 hypothetical protein [Cercozoa sp. M6MM] diamond 141 49.7 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;