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contig_metadata

23 rows where bioproject = "PRJEB3181", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 23 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 23 ✖

bioproject 1

  • PRJEB3181 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
55990 55990 PRJEB3181_P_NODE_2361_length_462_cov_11.661253_g2168_i0 PRJEB3181 2361 462 11.661253 53.87498886 Caenorhabditis briggsae 6238 Nematoda Nematoda 385 3.89e-102   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g2168 i0 88.474 72.7251082251082 321 33 69 4 1 319 989 1307 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 33599 385 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
56031 56031 PRJEB3181_P_NODE_4561_length_373_cov_6.561404_g4313_i0 PRJEB3181 4561 373 6.561404 24.47403692 Metazoa 33208 Nematoda Nematoda 68.2 1.36e-10   NR KAL3073343.1 157864 g4313 i0 77.1 1.70509383378016 48 11 38.6 0 367 224 238 285 KAL3073343.1 hypothetical protein niasHT_038700 [Heterodera trifolii] diamond 636 68.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
3539399 3539399 PRJEB3181_S_NODE_13783_length_174_cov_1.438849_g13490_i0 PRJEB3181 13783 174 1.438849 2.50359726 Soboliphyme baturini 241478 Nematoda Nematoda 81.3 2.66e-17   NR VDP14147.1 241478 g13490 i0 67.9 0.96551724137931 56 18 96.6 0 170 3 128 183 VDP14147.1 unnamed protein product [Soboliphyme baturini] diamond 168 81.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
7366399 7366399 PRJEB3181_P_NODE_12366_length_241_cov_2.819048_g12102_i0 PRJEB3181 12366 241 2.819048 6.79390568 Metazoa 33208 Nematoda Nematoda 52.8 0.022   NTclustered gi|606419|emb|Z47069.1| 6239 g12102 i0 100 0.348547717842324 28 0 12 0 193 220 11346 11373 Caenorhabditis elegans Cosmid F36G3, complete sequence blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
7708382 7708382 PRJEB3181_S_NODE_1747_length_387_cov_6.829545_g1456_i0 PRJEB3181 1747 387 6.829545 26.43033915 Allodiplogaster sudhausi 2761625 Nematoda Nematoda 135 3.5700000000000005e-27   NTclustered gi|675118796|gb|KJ877267.1| 2761625 g1456 i0 74.615 14.7157622739018 390 59 100 27 1 387 1295 943 Koerneria sudhausi strain SB413 28S ribosomal RNA gene, partial sequence blastn 5695 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Allodiplogaster Allodiplogaster sudhausi
8642037 8642037 PRJEB3181_S_NODE_1127_length_448_cov_15671.452785_g848_i0 PRJEB3181 1127 448 15671.452785 70208.1084768 Caenorhabditis 6237 Nematoda Nematoda 289 3.04e-73   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g848 i0 87.649 58.4732142857143 251 27 56 4 200 448 1307 1059 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 26196 289 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
10258794 10258794 PRJEB3181_S_NODE_12769_length_181_cov_1.116438_g12476_i0 PRJEB3181 12769 181 1.116438 2.02075278 Rhabditoides inermis 96661 Nematoda Nematoda 150 5.299999999999999e-32   NTclustered gi|256709332|gb|GQ422341.1| 96661 g12476 i0 89.744 4.79558011049724 117 12 65 0 9 125 268 384 Rhabditoides inermis large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 868 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
11534272 11534272 PRJEB3181_S_NODE_1630_length_397_cov_361.908840_g1340_i0 PRJEB3181 1630 397 361.90884 1436.7780948 Rhabditella axei 35559 Nematoda Nematoda 95.3 6.23e-15   NTclustered gi|2648587517|gb|PP135622.1| 35559 g1340 i0 87.805 9.14105793450882 82 8 20 1 302 381 2346 2265 Rhabditella axei isolate Impruneta small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3629 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditella Rhabditella axei
14084329 14084329 PRJEB3181_S_NODE_12072_length_185_cov_7.540000_g11779_i0 PRJEB3181 12072 185 7.54 13.949 Radopholus similis 46012 Nematoda Nematoda 95.3 2.59e-15   NTclustered gi|1559669219|gb|MK333516.1| 46012 g11779 i0 86.207 3.95675675675676 87 12 47 0 1 87 656 570 Radopholus similis isolate RSTZ2 28S large subunit ribosomal RNA gene, partial sequence blastn 732 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Radopholus Radopholus similis
16291518 16291518 PRJEB3181_P_NODE_5233_length_354_cov_68.811146_g4983_i0 PRJEB3181 5233 354 68.811146 243.59145684 Metazoa 33208 Nematoda Nematoda 110 1.96e-19   NTclustered gi|2170965796|dbj|LC631545.1| 2836152 g4983 i0 86.735 4.36440677966102 98 13 28 0 241 338 2706 2609 Sychnotylenchus sp. NK-2021 Ht genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 1545 111 0.990990990990991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Sychnotylenchus Sychnotylenchus sp. NK-2021
21390990 21390990 PRJEB3181_S_NODE_2377_length_350_cov_29.619048_g2084_i0 PRJEB3181 2377 350 29.619048 103.666668 Metazoa 33208 Nematoda Nematoda 110 1.93e-19   NTclustered gi|2170965796|dbj|LC631545.1| 2836152 g2084 i0 86.735 4.41428571428571 98 13 28 0 248 345 2706 2609 Sychnotylenchus sp. NK-2021 Ht genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 1545 111 0.990990990990991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Sychnotylenchus Sychnotylenchus sp. NK-2021
23007943 23007943 PRJEB3181_P_NODE_13199_length_233_cov_1.816832_g12935_i0 PRJEB3181 13199 233 1.816832 4.23321856 Rhabditoides inermis 96661 Nematoda Nematoda 82.4 3.26e-18   NR ACV21053.1 96661 g12935 i0 72.9 3.03862660944206 59 16 76 0 233 57 57 115 ACV21053.1 large subunit ribosomal protein 35, partial [Rhabditoides inermis] diamond 708 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
23941184 23941184 PRJEB3181_P_NODE_19419_length_187_cov_2.378205_g19155_i0 PRJEB3181 19419 187 2.378205 4.44724335 Chromadorea 119089 Nematoda Nematoda 121 4.3299999999999996e-23   NTclustered gi|395805743|gb|JQ957880.1| 90724 g19155 i0 100 35.2513368983957 65 0 35 0 118 182 1247 1183 Aphelenchoides fragariae isolate AChoFra3 small subunit ribosomal RNA gene, partial sequence blastn 6592 122 0.991803278688525 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fragariae
24281706 24281706 PRJEB3181_P_NODE_13860_length_226_cov_77.579487_g13596_i0 PRJEB3181 13860 226 77.579487 175.32964062 Caenorhabditis remanei 31234 Nematoda Nematoda 76.8 1.19e-9   NTclustered gi|2445394821|ref|XM_053736084.1| 31234 g13596 i0 94 1.32300884955752 50 3 22 0 175 224 101 150 Caenorhabditis remanei uncharacterized protein (GCK72_024857), partial mRNA blastn 299 76.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
26994851 26994851 PRJEB3181_P_NODE_21782_length_175_cov_1.083333_g21517_i0 PRJEB3181 21782 175 1.083333 1.89583275 Rhabditida 6236 Nematoda Nematoda 54.3 8.97e-7   NR VDP35265.1 6339 g21517 i0 74.2 2.12571428571429 31 8 53.1 0 173 81 200 230 VDP35265.1 unnamed protein product [Heligmosomoides polygyrus] diamond 372 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
27121261 27121261 PRJEB3181_P_NODE_12482_length_240_cov_1.741627_g12218_i0 PRJEB3181 12482 240 1.741627 4.1799048 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 44.3 0.0103   NR KAI6181668.1 269767 g12218 i0 31.3 6.275 67 46 83.8 0 240 40 366 432 KAI6181668.1 hypothetical protein M3Y98_00853700 [Aphelenchoides besseyi] diamond 1506 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
27248023 27248023 PRJEB3181_P_NODE_17423_length_199_cov_2.154762_g17159_i0 PRJEB3181 17423 199 2.154762 4.28797638 Aphelenchoides 90723 Nematoda Nematoda 88.2 9.74e-20   NR KAI6211714.1 269767 g17159 i0 71.4 7.59798994974874 56 16 84.4 0 199 32 138 193 KAI6211714.1 50S ribosomal protein L5 [Aphelenchoides besseyi] diamond 1512 88.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
27791570 27791570 PRJEB3181_S_NODE_15424_length_165_cov_3.584615_g15131_i0 PRJEB3181 15424 165 3.584615 5.91461475 Pristionchus fissidentatus 1538716 Nematoda Nematoda 63.2 3.28e-11   NR GMT14341.1 1538716 g15131 i0 65.2 0.836363636363636 46 16 83.6 0 155 18 53 98 GMT14341.1 hypothetical protein PFISCL1PPCAC_5638, partial [Pristionchus fissidentatus] diamond 138 63.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
28075497 28075497 PRJEB3181_P_NODE_9405_length_277_cov_4.402439_g9141_i0 PRJEB3181 9405 277 4.402439 12.19475603 Pristionchus fissidentatus 1538716 Nematoda Nematoda 92 5.83e-22   NR GMT14341.1 1538716 g9141 i0 64.3 2.25270758122744 70 24 75.8 1 272 63 30 98 GMT14341.1 hypothetical protein PFISCL1PPCAC_5638, partial [Pristionchus fissidentatus] diamond 624 92 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
30943163 30943163 PRJEB3181_P_NODE_12854_length_236_cov_3.785366_g12590_i0 PRJEB3181 12854 236 3.785366 8.93346376 Metazoa 33208 Nematoda Nematoda 45.1 0.00403   NR CAD5222652.1 6326 g12590 i0 51.4 4.24576271186441 70 27 89 4 234 25 50 112 CAD5222652.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 1002 45.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
31170500 31170500 PRJEB3181_P_NODE_12955_length_235_cov_3.906863_g12691_i0 PRJEB3181 12955 235 3.906863 9.18112805 Mesorhabditis spiculigera 96644 Nematoda Nematoda 88.2 2.76e-18   NR CAJ0582755.1 96644 g12691 i0 60.6 0.842553191489362 66 25 84.3 1 235 38 388 452 CAJ0582755.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 198 88.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
31986424 31986424 PRJEB3181_P_NODE_18578_length_192_cov_1.478261_g18314_i0 PRJEB3181 18578 192 1.478261 2.83826112 Metazoa 33208 Nematoda Nematoda 80.5 7.66e-17   NR MCP9260525.1 6287 g18314 i0 76.9 44.796875 52 12 81.3 0 190 35 90 141 MCP9260525.1 Histone H2B [Dirofilaria immitis] diamond 8601 81.3 0.990159901599016 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
32594295 32594295 PRJEB3181_P_NODE_20920_length_179_cov_1.398649_g20656_i0 PRJEB3181 20920 179 1.398649 2.50358171 Trichinella murrelli 144512 Nematoda Nematoda 85.1 2.51e-18   NR KRX40024.1 144512 g20656 i0 69.4 3.25139664804469 49 15 82.1 0 1 147 198 246 KRX40024.1 60S ribosomal protein L7 [Trichinella murrelli] diamond 582 85.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella murrelli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;