RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB3181" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJEB3181 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
55970 55970 PRJEB3181_P_NODE_2001_length_486_cov_64.279121_g1818_i0 PRJEB3181 2001 486 64.279121 312.39652806 Karpovia croatica 2925417 Root_unresolved Root_unresolved 100 1.67e-16   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g1818 i0 88.235 12.6460905349794 85 9 17 1 346 430 6020 6103 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6146 100 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
15358327 15358327 PRJEB3181_S_NODE_933_length_477_cov_12.382353_g661_i0 PRJEB3181 933 477 12.382353 59.06382381 Karpovia croatica 2925417 Root_unresolved Root_unresolved 100 1.63e-16   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g661 i0 88.235 12.8595387840671 85 9 18 1 53 137 6103 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6134 100 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
21732713 21732713 PRJEB3181_P_NODE_3958_length_391_cov_6.400000_g3715_i0 PRJEB3181 3958 391 6.4 25.024 Thecamonas trahens 529818 Root_unresolved Root_unresolved 213 1.62e-50   NTclustered gi|761380055|ref|NC_026452.1| 529818 g3715 i0 80.645 76.0920716112532 279 50 71 3 20 297 542 817 Thecamonas trahens strain ATCC 50062 mitochondrion, complete genome blastn 29752 213 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23008223 23008223 PRJEB3181_S_NODE_9559_length_205_cov_7.947059_g9266_i0 PRJEB3181 9559 205 7.947059 16.29147095 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 154 4.77e-33   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g9266 i0 88.8 54.3609756097561 125 14 61 0 31 155 5178 5302 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11144 154 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;