RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJEB30004" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 11 ✖

bioproject 1

  • PRJEB30004 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
37093 37093 PRJEB30004_P_NODE_326001_length_265_cov_1.632743_g310374_i0 PRJEB30004 326001 265 1.632743 4.32676895 Pijolavirus Pf17397FPD1 3431676 Viruses Viruses 390 4.519999999999999e-104   NTclustered gi|2190146233|gb|OM131411.1| 2914026 g310374 i0 93.258 2.86037735849057 267 14 100 3 1 265 15808 16072 Pseudomonas phage Pf17397_F_PD1, complete genome blastn 758 390 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Autographivirales Autotranscriptaviridae Pijolavirus Pijolavirus Pf17397FPD1
48800 48800 PRJEB30004_P_NODE_569881_length_173_cov_2.141791_g554254_i0 PRJEB30004 569881 173 2.141791 3.70529843 Chrocagost virus 3129398 Viruses Viruses 198 1.7599999999999998e-46   NTclustered gi|2717317482|gb|PP171846.1| 3129398 g554254 i0 87.283 146.21387283237 173 22 100 0 1 173 5858 5686 MAG: Chrocagost virus isolate CC1A_k141_84256 genomic sequence blastn 25295 198 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Chrocagost virus
1313459 1313459 PRJEB30004_P_NODE_369582_length_241_cov_1.915842_g353955_i0 PRJEB30004 369582 241 1.915842 4.61717922 Caudoviricetes sp. 2832643 Viruses Viruses 76.8 1.29e-9   NTclustered gi|2914928093|gb|OR221516.1| 2832643 g353955 i0 100 18.0497925311203 41 0 17 0 1 41 43866 43826 MAG: Caudoviricetes sp. isolate MSP1560 genomic sequence blastn 4350 76.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
2599083 2599083 PRJEB30004_P_NODE_5763_length_3527_cov_290.866112_g219_i16 PRJEB30004 5763 3527 290.866112 10258.84777024 Gammaretrovirus murleu 3428959 Viruses Viruses 6213 0   NTclustered gi|1167936699|gb|KY574508.1| 11786 g219 i16 98.444 100.218315849164 3534 45 99 2 1 3524 959 4492 Murine leukemia virus isolate Akv2-C25, complete genome blastn 353470 6213 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
3875278 3875278 PRJEB30004_P_NODE_5764_length_3527_cov_259.017775_g219_i17 PRJEB30004 5764 3527 259.017775 9135.55692425 Gammaretrovirus murleu 3428959 Viruses Viruses 5941 0   NTclustered gi|1167936699|gb|KY574508.1| 11786 g219 i17 97.057 100.205840657783 3534 94 99 2 1 3524 959 4492 Murine leukemia virus isolate Akv2-C25, complete genome blastn 353426 5941 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10253006 10253006 PRJEB30004_P_NODE_599329_length_167_cov_1.281250_g583702_i0 PRJEB30004 599329 167 1.28125 2.1396875 Ripastyr virus 3131364 Viruses Viruses 187 3.68e-43   NTclustered gi|2717322326|gb|PP173666.1| 3131364 g583702 i0 88.05 267.245508982036 159 17 95 2 1 158 635 792 MAG: Ripastyr virus isolate MP3_k141_6580 genomic sequence blastn 44630 187 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripastyr virus
12467607 12467607 PRJEB30004_P_NODE_232870_length_339_cov_2.070000_g217243_i0 PRJEB30004 232870 339 2.07 7.0173 Viruses 10239 Viruses Viruses 69.4 3.18e-7   NTclustered gi|1953437643|gb|MT157331.1| 47929 g217243 i0 100 11.8053097345133 37 0 11 0 1 37 162922 162886 Macacine betaherpesvirus 3 strain UCD59, complete genome blastn 4002 69.4 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Cytomegalovirus Cytomegalovirus macacinebeta3
12804190 12804190 PRJEB30004_P_NODE_607411_length_165_cov_1.801587_g591784_i0 PRJEB30004 607411 165 1.801587 2.97261855 Caudoviricetes sp. 2832643 Viruses Viruses 305 9.59e-79   NTclustered gi|2054434277|tpg|BK035998.1| 2832643 g591784 i0 100 223.927272727273 165 0 100 0 1 165 18168 18332 MAG TPA_asm: Caudoviricetes sp. isolate ctbaE6, partial genome blastn 36948 305 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
19165269 19165269 PRJEB30004_P_NODE_382216_length_235_cov_1.698980_g366589_i0 PRJEB30004 382216 235 1.69898 3.992603 Caulobacter phage Ccr29 1959737 Viruses Viruses 71.3 5.81e-8   NTclustered gi|1168054551|gb|KY555145.1| 1959737 g366589 i0 95.455 17.0978723404255 44 2 19 0 1 44 150508 150551 Caulobacter phage Ccr29, complete genome blastn 4018 71.3 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Jeanschmidtviridae Shapirovirus Caulobacter phage Ccr29
27791545 27791545 PRJEB30004_P_NODE_536004_length_181_cov_15.330986_g520377_i0 PRJEB30004 536004 181 15.330986 27.74908466 Pimephales minnow adintovirus 2609864 Viruses Viruses 58.2 3.33e-8   NR DAC81394.1 2609864 g520377 i0 69.4 0.596685082872928 36 11 59.7 0 110 3 7 42 DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] diamond 108 58.2 1 Viruses   Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus
29243880 29243880 PRJEB30004_P_NODE_490229_length_194_cov_2.116129_g474602_i0 PRJEB30004 490229 194 2.116129 4.10529026 Caudoviricetes sp. 2832643 Viruses Viruses 39.3 0.0332   NR DAJ92805.1 2832643 g474602 i0 62.5 0.494845360824742 32 12 49.5 0 33 128 8 39 DAJ92805.1 MAG TPA: hypothetical protein [Caudoviricetes sp.] diamond 96 39.3 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;