RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB30004" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB30004 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5149594 5149594 PRJEB30004_P_NODE_536445_length_181_cov_2.598592_g520818_i0 PRJEB30004 536445 181 2.598592 4.70345152 Adineta vaga complex sp. A JFF-2016 1813164 Rotifera other_Eukaryota 318 1.37e-82   NTclustered gi|1005055512|gb|KU860655.1| 1813164 g520818 i0 98.343 61.4033149171271 181 3 100 0 1 181 1888 2068 Adineta vaga complex sp. A JFF-2016 isolate H001 28S ribosomal RNA gene, partial sequence blastn 11114 318 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. A JFF-2016
6409786 6409786 PRJEB30004_P_NODE_206946_length_369_cov_2.363636_g191320_i0 PRJEB30004 206946 369 2.363636 8.72181684 Adineta vaga complex sp. C JFF-2016 1813166 Rotifera other_Eukaryota 604 2.149999999999999e-168   NTclustered gi|1005055542|gb|KU860685.1| 1813166 g191320 i0 96.953 95.7967479674797 361 10 98 1 10 369 50 410 Adineta vaga complex sp. C JFF-2016 isolate H004a 28S ribosomal RNA gene, partial sequence blastn 35349 604 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. C JFF-2016
9916699 9916699 PRJEB30004_P_NODE_239388_length_332_cov_2.580205_g223761_i0 PRJEB30004 239388 332 2.580205 8.5662806 Adineta 104781 Rotifera other_Eukaryota 603 6.889999999999997e-168   NTclustered gi|1005055512|gb|KU860655.1| 1813164 g223761 i0 99.398 44.9427710843374 332 2 100 0 1 332 1784 1453 Adineta vaga complex sp. A JFF-2016 isolate H001 28S ribosomal RNA gene, partial sequence blastn 14921 603 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. A JFF-2016
10243895 10243895 PRJEB30004_P_NODE_410429_length_222_cov_2.524590_g394802_i0 PRJEB30004 410429 222 2.52459 5.6045898 Adineta vaga 104782 Rotifera other_Eukaryota 383 6.1499999999999996e-102   NTclustered gi|259129963|gb|GQ398061.1| 104782 g394802 i0 97.748 3.2972972972973 222 5 100 0 1 222 10162 10383 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 732 383 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
16291329 16291329 PRJEB30004_P_NODE_503313_length_190_cov_2.708609_g487686_i0 PRJEB30004 503313 190 2.708609 5.1463571 Eurotatoria 2816136 Rotifera other_Eukaryota 340 3.1099999999999993e-89   NTclustered gi|72153731|gb|DQ089739.1| 104782 g487686 i0 98.947 97.6894736842105 190 2 100 0 1 190 502 691 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 18561 340 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
19172125 19172125 PRJEB30004_P_NODE_525116_length_184_cov_2.544828_g509489_i0 PRJEB30004 525116 184 2.544828 4.68248352 Adineta vaga 104782 Rotifera other_Eukaryota 278 2.38e-70   NTclustered gi|72153731|gb|DQ089739.1| 104782 g509489 i0 94.022 95.375 184 10 100 1 1 184 40 222 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 17549 278 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;