RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB30004" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB30004 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27222708 27222708 PRJEB30004_P_NODE_226283_length_346_cov_2.355049_g210656_i0 PRJEB30004 226283 346 2.355049 8.14846954 Rhodothermales bacterium 2306054 Bacteria Bacteria 43.9 0.0425   NR MEQ9105442.1 2306054 g210656 i0 43.8 0.554913294797688 64 34 53.8 1 102 287 264 327 MEQ9105442.1 aminotransferase class V-fold PLP-dependent enzyme [Rhodothermales bacterium] diamond 192 43.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
28233188 28233188 PRJEB30004_P_NODE_244966_length_327_cov_1.281250_g229339_i0 PRJEB30004 244966 327 1.28125 4.1896875 Rhodothermus marinus 29549 Bacteria Bacteria 114 1.01e-26   NR WP_144295416.1 29549 g229339 i0 58.3 0.880733944954128 96 40 88.1 0 292 5 24 119 WP_144295416.1 glycoside hydrolase family 78 protein [Rhodothermus marinus] diamond 288 114 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;