RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB30004" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB30004 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7366042 7366042 PRJEB30004_P_NODE_112706_length_575_cov_259.988806_g97480_i0 PRJEB30004 112706 575 259.988806 1494.9356345 root 1 Root_unresolved Root_unresolved 676 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g97480 i0 94.558 198.904347826087 441 18 76 6 1 437 3117128 3117566 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 114370 676 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
27917592 27917592 PRJEB30004_P_NODE_377885_length_237_cov_1.737374_g362258_i0 PRJEB30004 377885 237 1.737374 4.11757638 Methanomethylovorans sp. 2758717 Archaea Archaea 40.8 0.0474   NR MBC7086121.1 2758717 g362258 i0 34 0.632911392405063 50 33 63.3 0 55 204 16 65 MBC7086121.1 DUF504 domain-containing protein [Methanomethylovorans sp.] diamond 150 40.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanomethylovorans Methanomethylovorans sp.
30412716 30412716 PRJEB30004_P_NODE_124993_length_534_cov_1.773737_g109587_i0 PRJEB30004 124993 534 1.773737 9.47175558 Candidatus Hydrothermarchaeota archaeon 2250275 Archaea Archaea 57.4 1.1e-6   NR MFQ6052574.1 2250275 g109587 i0 36.7 0.50561797752809 90 46 45.5 4 532 290 83 170 MFQ6052574.1 hypothetical protein [Candidatus Hydrothermarchaeota archaeon] diamond 270 57.4 1 Archaea   Methanobacteriati Candidatus Hydrothermarchaeota         Candidatus Hydrothermarchaeota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;