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contig_metadata

33 rows where bioproject = "PRJEB30004", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 33 ✖

tax_kingdom 1

  • Bacillati · 33 ✖

bioproject 1

  • PRJEB30004 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
47353 47353 PRJEB30004_P_NODE_540241_length_180_cov_2.943262_g524614_i0 PRJEB30004 540241 180 2.943262 5.2978716 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 235 1.4099999999999998e-57   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g524614 i0 90.503 18.3055555555556 179 15 99 2 1 178 275961 275784 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 3295 235 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
1310484 1310484 PRJEB30004_P_NODE_306482_length_277_cov_2.294118_g290855_i0 PRJEB30004 306482 277 2.294118 6.35470686 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 327 3.78e-85   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g290855 i0 88.087 138.429602888087 277 32 100 1 1 277 273757 274032 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 38345 327 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
3857053 3857053 PRJEB30004_P_NODE_191744_length_390_cov_2.646724_g176127_i0 PRJEB30004 191744 390 2.646724 10.3222236 Roseiflexus sp. RS-1 357808 Bacteria Bacteria 340 7.1e-89   NTclustered gi|470481958|ref|NR_076505.1| 357808 g176127 i0 87.96 148.389743589744 299 22 76 8 94 390 1398 1112 Roseiflexus sp. RS-1 strain RS-1 23S ribosomal RNA, complete sequence blastn 57872 340 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus sp. RS-1
8967944 8967944 PRJEB30004_P_NODE_406048_length_224_cov_2.064865_g390421_i0 PRJEB30004 406048 224 2.064865 4.6252976 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 167 6.81e-37   NTclustered gi|2874253704|emb|OY969431.1| 1672391 g390421 i0 84.615 24.7544642857143 169 24 75 2 12 178 64228 64396 MAG: uncultured Chloroflexia bacterium isolate MFD02979.bin.c.2 genome assembly, chromosome: 1 blastn 5545 167 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
9916769 9916769 PRJEB30004_P_NODE_40088_length_1215_cov_6.208333_g29545_i0 PRJEB30004 40088 1215 6.208333 75.43124595 Caldilinea 233191 Bacteria Bacteria 1358 0   NTclustered gi|470476010|ref|NR_076314.1| 133453 g29545 i0 86.851 146.869958847737 1232 141 100 10 1 1215 496 1723 Caldilinea aerophila strain STL-6-O1 23S ribosomal RNA gene, complete sequence blastn 178447 1358 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea aerophila
12807209 12807209 PRJEB30004_P_NODE_671191_length_153_cov_1.438596_g655564_i0 PRJEB30004 671191 153 1.438596 2.20105188 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 147 5.589999999999999e-31   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g655564 i0 90.826 149.78431372549 109 10 71 0 34 142 3495577 3495469 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 22917 147 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
14082643 14082643 PRJEB30004_P_NODE_686552_length_150_cov_2.396396_g670925_i0 PRJEB30004 686552 150 2.396396 3.594594 Dehalogenimonas formicexedens 1839801 Bacteria Bacteria 73.1 9.38e-9   NTclustered gi|1132444150|gb|CP018258.1| 1839801 g670925 i0 86.364 0.44 66 9 44 0 1 66 639493 639558 Dehalogenimonas formicexedens strain NSZ-14, complete genome blastn 66 73.1 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalogenimonas Dehalogenimonas formicexedens
17890762 17890762 PRJEB30004_P_NODE_369195_length_241_cov_2.316832_g353568_i0 PRJEB30004 369195 241 2.316832 5.58356512 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 278 3.29e-70   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g353568 i0 89.189 85.2697095435685 222 24 92 0 16 237 8228154 8227933 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 20550 278 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
19166291 19166291 PRJEB30004_P_NODE_403856_length_225_cov_1.973118_g388229_i0 PRJEB30004 403856 225 1.973118 4.4395155 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 195 3.14e-45   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g388229 i0 88.679 331.884444444444 159 18 71 0 42 200 274850 274692 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 74674 195 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
20439523 20439523 PRJEB30004_P_NODE_362817_length_244_cov_3.102439_g347190_i0 PRJEB30004 362817 244 3.102439 7.56995116 Candidatus Limnocylindrales bacterium 2952938 Bacteria Bacteria 79 1.92e-16   NR HEU5205134.1 2952938 g347190 i0 61.2 2.61885245901639 67 26 82.4 0 44 244 1 67 HEU5205134.1 GntR family transcriptional regulator [Candidatus Limnocylindrales bacterium] diamond 639 79 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria Candidatus Limnocylindrales     Candidatus Limnocylindrales bacterium
21721911 21721911 PRJEB30004_P_NODE_495178_length_193_cov_1.396104_g479551_i0 PRJEB30004 495178 193 1.396104 2.69448072 Chloroflexota bacterium 2026724 Bacteria Bacteria 102 7.93e-25   NR MCC6178170.1 2026724 g479551 i0 78.3 6.45077720207254 60 13 93.3 0 14 193 22 81 MCC6178170.1 polyphosphate kinase 2 [Chloroflexota bacterium] diamond 1245 102 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
21730561 21730561 PRJEB30004_P_NODE_674538_length_152_cov_2.787611_g658911_i0 PRJEB30004 674538 152 2.787611 4.23716872 Caldilineaceae bacterium 2614250 Bacteria Bacteria 126 7.22e-25   NTclustered gi|2893356069|emb|OZ220492.1| 2614250 g658911 i0 81.818 5.06578947368421 154 25 100 3 1 152 2778246 2778094 MAG: Caldilineaceae bacterium isolate e886e3b1-96bd-41d4-96ed-8e2f365de7fb genome assembly, chromosome: 1 blastn 770 126 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
23000809 23000809 PRJEB30004_P_NODE_570039_length_173_cov_2.022388_g554412_i0 PRJEB30004 570039 173 2.022388 3.49873124 uncultured Aggregatilineales bacterium 3063736 Bacteria Bacteria 111 2.36e-20   NTclustered gi|2550423267|gb|OR335971.1| 3063736 g554412 i0 92.308 0.901734104046243 78 6 45 0 96 173 2408 2331 Uncultured Aggregatilineales bacterium clone ASV-503 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 156 111 1 Bacteria   Bacillati Chloroflexota Anaerolineae Aggregatilineales Aggregatilineaceae   uncultured Aggregatilineales bacterium
26931853 26931853 PRJEB30004_P_NODE_682182_length_151_cov_1.714286_g666555_i0 PRJEB30004 682182 151 1.714286 2.58857186 Bacteria 2 Bacteria Bacteria 91.3 8.53e-20   NR HEV3309432.1 2026724 g666555 i0 88 1.98675496688742 50 6 99.3 0 1 150 560 609 HEV3309432.1 FAD-linked oxidase C-terminal domain-containing protein [Chloroflexota bacterium] diamond 300 91.7 0.995637949836423 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27064815 27064815 PRJEB30004_P_NODE_302242_length_280_cov_1.966805_g286615_i0 PRJEB30004 302242 280 1.966805 5.507054 Chloroflexota bacterium 2026724 Bacteria Bacteria 169 1.41e-48   NR HEX6508864.1 2026724 g286615 i0 80.6 0.996428571428571 93 18 99.6 0 280 2 191 283 HEX6508864.1 long-chain-fatty-acid--CoA ligase [Chloroflexota bacterium] diamond 279 169 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27760165 27760165 PRJEB30004_P_NODE_434704_length_213_cov_1.557471_g419077_i0 PRJEB30004 434704 213 1.557471 3.31741323 Caldilineaceae bacterium 2614250 Bacteria Bacteria 118 4.75e-29   NR MEZ4617933.1 2614250 g419077 i0 75.7 1.97183098591549 70 17 98.6 0 211 2 170 239 MEZ4617933.1 RHS repeat-associated core domain-containing protein [Caldilineaceae bacterium] diamond 420 118 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
27823169 27823169 PRJEB30004_P_NODE_183544_length_403_cov_2.285714_g167933_i0 PRJEB30004 183544 403 2.285714 9.21142742 Chloroflexota bacterium 2026724 Bacteria Bacteria 220 1.41e-63   NR MDQ6673653.1 2026724 g167933 i0 78.4 2.07692307692308 139 24 99 3 400 2 683 821 MDQ6673653.1 LLM class flavin-dependent oxidoreductase [Chloroflexota bacterium] diamond 837 220 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27886088 27886088 PRJEB30004_P_NODE_399425_length_227_cov_1.744681_g383798_i0 PRJEB30004 399425 227 1.744681 3.96042587 Anaerolineae bacterium 2052143 Bacteria Bacteria 132 1.87e-36   NR MCC6801234.1 2052143 g383798 i0 88.4 2.73568281938326 69 8 91.2 0 1 207 174 242 MCC6801234.1 ATP-binding protein [Anaerolineae bacterium] diamond 621 132 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
28100500 28100500 PRJEB30004_P_NODE_467805_length_201_cov_2.092593_g452178_i0 PRJEB30004 467805 201 2.092593 4.20611193 Bacteria 2 Bacteria Bacteria 98.6 4.59e-22   NR HLZ10037.1 2026724 g452178 i0 68.2 2.95522388059702 66 21 98.5 0 2 199 258 323 HLZ10037.1 two-component regulator propeller domain-containing protein [Chloroflexota bacterium] diamond 594 98.6 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28479613 28479613 PRJEB30004_P_NODE_688046_length_150_cov_1.738739_g672419_i0 PRJEB30004 688046 150 1.738739 2.6081085 Bacillati 1783272 Bacteria Bacteria 70.9 1.23e-12   NR MBV9791075.1 2026724 g672419 i0 70.2 7.18 47 14 94 0 143 3 1646 1692 MBV9791075.1 amino acid adenylation domain-containing protein [Chloroflexota bacterium] diamond 1077 71.2 0.995786516853933 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28644087 28644087 PRJEB30004_P_NODE_344927_length_254_cov_1.627907_g329300_i0 PRJEB30004 344927 254 1.627907 4.13488378 Ktedonobacterales bacterium 2306968 Bacteria Bacteria 43.1 0.0312   NR HKS69084.1 2306968 g329300 i0 82.1 0.330708661417323 28 5 33.1 0 85 2 1 28 HKS69084.1 hydrogenase 4 subunit B [Ktedonobacterales bacterium] diamond 84 43.1 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales     Ktedonobacterales bacterium
30159396 30159396 PRJEB30004_P_NODE_363332_length_244_cov_2.087805_g347705_i0 PRJEB30004 363332 244 2.087805 5.0942442 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 48.1 4.66e-4   NR MCC6386707.1 2026734 g347705 i0 53.8 0.959016393442623 39 18 48 0 241 125 340 378 MCC6386707.1 protein kinase [Dehalococcoidia bacterium] diamond 234 48.1 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30633397 30633397 PRJEB30004_P_NODE_293533_length_286_cov_2.234818_g277906_i0 PRJEB30004 293533 286 2.234818 6.39157948 Herpetosiphonaceae bacterium 2720503 Bacteria Bacteria 106 1.43e-24   NR MBA3943638.1 2720503 g277906 i0 58.2 5.86363636363636 91 38 95.5 0 277 5 52 142 MBA3943638.1 diaminopimelate decarboxylase [Herpetosiphonaceae bacterium] diamond 1677 106 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae   Herpetosiphonaceae bacterium
30785025 30785025 PRJEB30004_P_NODE_611174_length_164_cov_2.384000_g595547_i0 PRJEB30004 611174 164 2.384 3.90976 FCB group 1783270 Bacteria Bacteria 70.5 2.06e-12   NR MBN2549712.1 2073117 g595547 i0 57.4 3.95121951219512 54 23 98.8 0 2 163 136 189 MBN2549712.1 beta-lactamase family protein [Anaerolineales bacterium] diamond 648 71.2 0.990168539325843 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
30918117 30918117 PRJEB30004_P_NODE_430794_length_214_cov_2.594286_g415167_i0 PRJEB30004 430794 214 2.594286 5.55177204 Chloroflexota bacterium 2026724 Bacteria Bacteria 58.5 1.45e-9   NR MDQ3466956.1 2026724 g415167 i0 76.3 0.532710280373832 38 9 53.3 0 213 100 11 48 MDQ3466956.1 transcriptional regulator [Chloroflexota bacterium] diamond 114 58.5 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31076044 31076044 PRJEB30004_P_NODE_505495_length_190_cov_1.357616_g489868_i0 PRJEB30004 505495 190 1.357616 2.5794704 Chloroflexota bacterium 2026724 Bacteria Bacteria 100 1.06e-23   NR HEX6508478.1 2026724 g489868 i0 76.2 2.98421052631579 63 15 99.5 0 189 1 42 104 HEX6508478.1 winged helix-turn-helix domain-containing protein [Chloroflexota bacterium] diamond 567 100 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31518724 31518724 PRJEB30004_P_NODE_381556_length_235_cov_2.301020_g365929_i0 PRJEB30004 381556 235 2.30102 5.407397 Chloroflexota bacterium 2026724 Bacteria Bacteria 102 2.3399999999999994e-23   NR HLZ07472.1 2026724 g365929 i0 71.8 3.01276595744681 78 22 99.6 0 234 1 526 603 HLZ07472.1 chitobiase/beta-hexosaminidase C-terminal domain-containing protein [Chloroflexota bacterium] diamond 708 102 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31993093 31993093 PRJEB30004_P_NODE_553638_length_177_cov_1.782609_g538011_i0 PRJEB30004 553638 177 1.782609 3.15521793 Anaerolineae bacterium 2052143 Bacteria Bacteria 97.1 1.18e-21   NR MCD6289033.1 2052143 g538011 i0 66.1 1.94915254237288 59 20 100 0 177 1 180 238 MCD6289033.1 glycoside hydrolase family 78 protein [Anaerolineae bacterium] diamond 345 97.1 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
32018206 32018206 PRJEB30004_P_NODE_361078_length_245_cov_2.388350_g345451_i0 PRJEB30004 361078 245 2.38835 5.8514575 Bacteria 2 Bacteria Bacteria 69.3 4.08e-13   NR HEY1292831.1 2026724 g345451 i0 50 2.20408163265306 64 32 78.4 0 16 207 30 93 HEY1292831.1 endonuclease [Chloroflexota bacterium] diamond 540 69.7 0.994261119081779 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32088025 32088025 PRJEB30004_P_NODE_636438_length_159_cov_2.733333_g620811_i0 PRJEB30004 636438 159 2.733333 4.34599947 Anaerolineales bacterium 2073117 Bacteria Bacteria 79.7 2.24e-16   NR MCK5794276.1 2073117 g620811 i0 62.3 1 53 20 100 0 1 159 167 219 MCK5794276.1 DUF4143 domain-containing protein [Anaerolineales bacterium] diamond 159 79.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
32372947 32372947 PRJEB30004_P_NODE_321399_length_268_cov_1.410480_g305772_i0 PRJEB30004 321399 268 1.41048 3.7800864 Chloroflexota bacterium 2026724 Bacteria Bacteria 153 4.4e-41   NR HEX6510597.1 2026724 g305772 i0 86.4 1.97014925373134 88 12 98.5 0 266 3 453 540 HEX6510597.1 alpha-L-arabinofuranosidase C-terminal domain-containing protein [Chloroflexota bacterium] diamond 528 153 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32814503 32814503 PRJEB30004_P_NODE_500480_length_191_cov_2.105263_g484853_i0 PRJEB30004 500480 191 2.105263 4.02105233 Anaerolineae bacterium 2052143 Bacteria Bacteria 77 8.89e-15   NR MBZ0299947.1 2052143 g484853 i0 63.6 2.62303664921466 55 20 86.4 0 170 6 38 92 MBZ0299947.1 SDR family oxidoreductase [Anaerolineae bacterium] diamond 501 77 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
32877476 32877476 PRJEB30004_P_NODE_575260_length_172_cov_1.624060_g559633_i0 PRJEB30004 575260 172 1.62406 2.7933832 Ktedonobacterales bacterium 2306968 Bacteria Bacteria 76.6 9.82e-16   NR HZC78526.1 2306968 g559633 i0 77.8 0.784883720930233 45 10 78.5 0 3 137 127 171 HZC78526.1 RNA polymerase sigma factor [Ktedonobacterales bacterium] diamond 135 76.6 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales     Ktedonobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;